RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 TRIB1Q96RU8 372 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 NTMT1Q9BV86 223 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 UGT2B28Q9BY64 529 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 MRPL1Q9BYD6 325 aaKnown RBP13.54□□□□□ -0.24
RPS28-201ENST00000417088 NXF5Q9H1B4 397 aaKnown RBP13.54□□□□□ -0.24
RPS28-201ENST00000417088 VPS11Q9H270 941 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 ZBTB26Q9HCK0 441 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 FOXD3Q9UJU5 478 aaPredicted RBP13.54□□□□□ -0.24
RPS28-201ENST00000417088 ADAM29Q9UKF5 820 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 CAMK2AQ9UQM7 478 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 DTX4Q9Y2E6 619 aa13.54□□□□□ -0.24
RPS28-201ENST00000417088 KIAA1549Q9HCM3 1950 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 NIPBLQ6KC79 2804 aaeCLIP13.53□□□□□ -0.24
RPS28-201ENST00000417088 ESYT3A0FGR9 886 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 MBD3L4A6NDZ8 208 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 MBD3L3A6NE82 208 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 MBD3L5A6NJ08 208 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 CD8B2A6NJW9 211 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 GNB5O14775 395 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 PORP16435 677 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 NAGAP17050 411 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 DNASE1P24855 282 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 TACR1P25103 407 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 PTPN6P29350 595 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 CCNG1P51959 295 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 AGFG1P52594 562 aaKnown RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 MGAT2Q10469 447 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 TRAF3Q13114 568 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 TOMM20Q15388 145 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 SF3B4Q15427 424 aaKnown RBP eCLIP13.53□□□□□ -0.249e-7■■■□□ 18.8
RPS28-201ENST00000417088 CCNYL2Q5T2Q4 361 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 UBAP2Q5T6F2 1119 aaKnown RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 TTC19Q6DKK2 380 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 DESI1Q6ICB0 168 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 FAM111BQ6SJ93 734 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 GOT1L1Q8NHS2 421 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 MBD3L2Q8NHZ7 208 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 ABTB1Q969K4 478 aaPredicted RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 NSUN5Q96P11 429 aaKnown RBP13.53□□□□□ -0.24
RPS28-201ENST00000417088 ZDHHC18Q9NUE0 388 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 FETUBQ9UGM5 382 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 PCTPQ9UKL6 214 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 CES1P1Q9UKY3 287 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 PCDHA9Q9Y5H5 950 aa13.53□□□□□ -0.24
RPS28-201ENST00000417088 CDH16O75309 829 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 PPM1BO75688 479 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 KRT15P19012 456 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 CTSSP25774 331 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 CASQ1P31415 396 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 SOX18P35713 384 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 NAGLUP54802 743 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 PPP2R2AP63151 447 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 SLC7A5Q01650 507 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 MAP4K2Q12851 820 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 NNATQ16517 81 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 PRICKLE4Q2TBC4 344 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 C6orf163Q5TEZ5 329 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 SLC48A1Q6P1K1 146 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 TMEM81Q6P7N7 255 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 PAGE2Q7Z2X7 111 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 YRDCQ86U90 279 aaKnown RBP13.52□□□□□ -0.25
RPS28-201ENST00000417088 VWA5B2Q8N398 1253 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 METTL4Q8N3J2 472 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 SIMC1Q8NDZ2 872 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 OR1J4Q8NGS1 313 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 HGDQ93099 445 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 NODALQ96S42 347 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 METTL7AQ9H8H3 244 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 CALHM2Q9HA72 323 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 AHSPQ9NZD4 102 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 MAT2BQ9NZL9 334 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 ZNF639Q9UID6 485 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 EDARQ9UNE0 448 aa13.52□□□□□ -0.25
RPS28-201ENST00000417088 EXPH5Q8NEV8 1989 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 A0A1B0GTL3 188 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 C1orf226A1L170 272 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 TUBAL3A6NHL2 446 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 STX16-NPEPL1H3BU86 382 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 STX16O14662 325 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 ICOSLGO75144 302 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 RBP1P09455 135 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 EPXP11678 715 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 FEN1P39748 380 aaKnown RBP13.51□□□□□ -0.25
RPS28-201ENST00000417088 PTGDSP41222 190 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 DGKQP52824 942 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 MAPK12P53778 367 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 FOXD4Q12950 439 aaPredicted RBP13.51□□□□□ -0.25
RPS28-201ENST00000417088 IFT88Q13099 833 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 EXOSC7Q15024 291 aaKnown RBP13.51□□□□□ -0.25
RPS28-201ENST00000417088 SGO1Q5FBB7 561 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 C10orf62Q5T681 223 aaPredicted RBP13.51□□□□□ -0.25
RPS28-201ENST00000417088 ANGPTL8Q6UXH0 198 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 NUP54Q7Z3B4 507 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 ZNF572Q7Z3I7 529 aaPredicted RBP13.51□□□□□ -0.25
RPS28-201ENST00000417088 COMMD6Q7Z4G1 85 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 MILR1Q7Z6M3 343 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 KIF18BQ86Y91 864 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 MMP21Q8N119 569 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 C9orf106Q8NAJ2 232 aa13.51□□□□□ -0.25
RPS28-201ENST00000417088 FAM83FQ8NEG4 500 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms