RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-205	ENST00000409952	HACD3	Q9P035	362 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	FZR1	Q9UM11	496 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	CA5B	Q9Y2D0	317 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	GSTK1	Q9Y2Q3	226 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	HS3ST3B1	Q9Y662	390 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	ATP10D	Q9P241	1426 aa		4.37	□□□□□ -1.71
LSM5-205	ENST00000409952	IGLV5-52	A0A0A0MRZ9	124 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	IGLV5-39	A0A0G2JS06	123 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	WASHC1	A8K0Z3	465 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	ZNF587B	E7ETH6	402 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952		H0YL77	283 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	NDUFS8	O00217	210 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	STX7	O15400	261 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	KCNAB3	O43448	404 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TIMM8A	O60220	97 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TSPAN2	O60636	221 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	F7	P08709	466 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SLC35G4	P0C7Q5	338 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	UBTFL6	P0CB48	400 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	MBL2	P11226	248 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	LAP3	P28838	519 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	BMI1	P35226	326 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	MAGEA8	P43361	318 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	CDKN1B	P46527	198 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	CCT3	P49368	545 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SGSH	P51688	502 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	NDST1	P52848	882 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	PLA2G16	P53816	162 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	HADHB	P55084	474 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	RPL24	P83731	157 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TRAF3	Q13114	568 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	DNAJC3	Q13217	504 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	MAB21L1	Q13394	359 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	GANAB	Q14697	944 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	PRTG	Q2VWP7	1150 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	DDI2	Q5TDH0	399 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	ATL3	Q6DD88	541 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TTC19	Q6DKK2	380 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	DMKN	Q6E0U4	476 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SLC18B1	Q6NT16	456 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	KIF6	Q6ZMV9	814 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952		Q6ZRG5	221 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	C1QL2	Q7Z5L3	287 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	PIP4P1	Q86T03	277 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	ITIH5	Q86UX2	942 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	RANBP3L	Q86VV4	465 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SPEM1	Q8N4L4	309 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	FAM89B	Q8N5H3	189 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SPERT	Q8NA61	448 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	ZNF473	Q8WTR7	871 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TSEN15	Q8WW01	171 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	FAM3C	Q92520	227 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SLC47A1	Q96FL8	570 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	IFT74	Q96LB3	600 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	RIT2	Q99578	217 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	QTRT1	Q9BXR0	403 aa	Known RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	DCLK3	Q9C098	648 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	AUNIP	Q9H7T9	357 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	UBTD1	Q9HAC8	227 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SLC2A8	Q9NY64	477 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	NLGN3	Q9NZ94	848 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	LCMT1	Q9UIC8	334 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	PRDM4	Q9UKN5	801 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	ELF5	Q9UKW6	265 aa	Predicted RBP	4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	EMCN	Q9ULC0	261 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	VDAC3	Q9Y277	283 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	SLC6A5	Q9Y345	797 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	FKBP7	Q9Y680	259 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	COMMD3-BMI1	R4GMX3	469 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	FGD5	Q6ZNL6	1462 aa		4.36	□□□□□ -1.71
LSM5-205	ENST00000409952	TAF1	P21675	1872 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	TTC26	A0AVF1	554 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	OR2AG2	A6NM03	316 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	ABCD4	O14678	606 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	CFLAR	O15519	480 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	B4GAT1	O43505	415 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	KIAA0513	O60268	411 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	TRIM3	O75382	744 aa	Predicted RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	UPK3A	O75631	287 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	PMS2P2	O95744	297 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	TSPAN12	O95859	305 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	FCER2	P06734	321 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	GSTA1	P08263	222 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	PRF1	P14222	555 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	CPN2	P22792	545 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	NMT1	P30419	496 aa	Known RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	MAT2A	P31153	395 aa	Known RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	NUP62	P37198	522 aa	Predicted RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	KCNJ4	P48050	445 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	OSTN	P61366	133 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	RPS4X	P62701	263 aa	Known RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	MRPS6	P82932	125 aa	Known RBP	4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.35	□□□□□ -1.71	1e-6	■□□□□ 10.3
LSM5-205	ENST00000409952	EXT1	Q16394	746 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	C3AR1	Q16581	482 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	KLHL40	Q2TBA0	621 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	PIP5KL1	Q5T9C9	394 aa		4.35	□□□□□ -1.71
LSM5-205	ENST00000409952	RAET1L	Q5VY80	246 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms