RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 OR10A3P58181 314 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 ZNF33BQ06732 778 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 TSTA3Q13630 321 aaPredicted RBP12.76□□□□□ -0.37
SKA3-201ENST00000298260 FGL2Q14314 439 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 MELKQ14680 651 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 GINS1Q14691 196 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 LRRC73Q5JTD7 316 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 CLEC12AQ5QGZ9 265 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 LSM14AQ8ND56 463 aaKnown RBP12.76□□□□□ -0.37
SKA3-201ENST00000298260 OR8J1Q8NGP2 316 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 SLC7A13Q8TCU3 470 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 FBXO32Q969P5 355 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 PLA2G12AQ9BZM1 189 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 THSD1Q9NS62 852 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 COPS3Q9UNS2 423 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 CLCA2Q9UQC9 943 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 PCDHB1Q9Y5F3 818 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 CACNG2Q9Y698 323 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 A0A0B4J203 849 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 GABRPO00591 440 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 FZD6O60353 706 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 TCRBP04435 133 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 ALDOBP05062 364 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 ELAVL4P26378 380 aaKnown RBP12.76□□□□□ -0.37
SKA3-201ENST00000298260 BICRALQ6AI39 1079 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 TSPAN33Q86UF1 283 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 RBFAQ8N0V3 343 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 OR8K5Q8NH50 307 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 GIMAP1Q8WWP7 306 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 UFD1Q92890 307 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 RFT1Q96AA3 541 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 RNFT2Q96EX2 444 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 SFXN2Q96NB2 322 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 ZFP3Q96NJ6 502 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 WRAP53Q9BUR4 548 aaKnown RBP12.76□□□□□ -0.37
SKA3-201ENST00000298260 EMC7Q9NPA0 242 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 IL20RAQ9UHF4 553 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 ATPIF1Q9UII2 106 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 TMEM5Q9Y2B1 443 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 MBLAC1A4D2B0 266 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 CHURC1-FNTBB4DL54 471 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 F5H5T6 163 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 ANKRD34CP0C6C1 535 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 LIMS3P0CW19 117 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 LIMS4P0CW20 117 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 CTGFP29279 349 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 TSPAN5P62079 268 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 CAP1Q01518 475 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 COX10Q12887 443 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 IGSF11Q5DX21 431 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 C12orf73Q69YU5 71 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 DGLUCYQ7Z3D6 616 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 UBTD2Q8WUN7 234 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 MED8Q96G25 268 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 EGLN3Q9H6Z9 239 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 SCPEP1Q9HB40 452 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 C1GALT1Q9NS00 363 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 ZMAT5Q9UDW3 170 aaKnown RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 GMEB2Q9UKD1 530 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 RANBP2P49792 3224 aaKnown RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 APOC3P02656 99 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 HMGA2P52926 109 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 WDR5P61964 334 aaKnown RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 RPS7P62081 194 aaKnown RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 ILKQ13418 452 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 GRIN2CQ14957 1233 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 MPEG1Q2M385 716 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 DUSP28Q4G0W2 176 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 NDUFAF5Q5TEU4 345 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 PGBD2Q6P3X8 592 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 LRRTM4Q86VH4 590 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 COMTD1Q86VU5 262 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 OR2T4Q8NH00 348 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 GCDHQ92947 438 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 C11orf24Q96F05 449 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 SARGQ9BW04 601 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 CFAP97Q9P2B7 532 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 TESQ9UGI8 421 aaKnown RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 SRRDQ9UH36 339 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 COL4A4P53420 1690 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 FAM74A7A6NL05 159 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 CD160O95971 181 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 BCHEP06276 602 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 ZP3P21754 424 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 CRYBB1P53674 252 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 MLLT1Q03111 559 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 ZNF792Q3KQV3 632 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 FAM74A3Q4VXF1 159 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 ARHGAP15Q53QZ3 475 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 C3orf38Q5JPI3 329 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 DCST1Q5T197 706 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 TCTN3Q6NUS6 607 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 SERPINA13PQ6UXR4 307 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 VPS37AQ8NEZ2 397 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 GPR32P1Q8NGA4 272 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 OTULINQ96BN8 352 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 ZNF578Q96N58 590 aaPredicted RBP12.75□□□□□ -0.37
SKA3-201ENST00000298260 SEMA3GQ9NS98 782 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 SCML2Q9UQR0 700 aa12.75□□□□□ -0.37
SKA3-201ENST00000298260 NLRC5Q86WI3 1866 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms