RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ANXA11P50995 505 aaKnown RBP17.66■□□□□ 0.42
CPSF3-201ENST00000238112 IFITM2Q01629 132 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 NXNL2Q5VZ03 156 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 C1orf94Q6P1W5 598 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 RAB42Q8N4Z0 105 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 MENTQ9BUN1 341 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 TP63Q9H3D4 680 aaPredicted RBP17.66■□□□□ 0.42
CPSF3-201ENST00000238112 ABCB9Q9NP78 766 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 FBXW2Q9UKT8 454 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 MRPS23Q9Y3D9 190 aaKnown RBP17.66■□□□□ 0.42
CPSF3-201ENST00000238112 A0A0A6YYD5 115 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 A0A1W2PQ09 198 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 SNTNA6NMZ2 147 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 IDH3BO43837 385 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 LCMT2O60294 686 aaKnown RBP17.66■□□□□ 0.42
CPSF3-201ENST00000238112 S100A1P23297 94 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 RFX2P48378 723 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 WNT4P56705 351 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 CDK5Q00535 292 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 SCN1BQ07699 218 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 GNA13Q14344 377 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 C3orf38Q5JPI3 329 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 ATAD3CQ5T2N8 411 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 CLDN22Q8N7P3 220 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 MORN4Q8NDC4 146 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 YIPF4Q9BSR8 244 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 DDX28Q9NUL7 540 aaKnown RBP17.66■□□□□ 0.42
CPSF3-201ENST00000238112 DEC1Q9P2X7 70 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 CARD8Q9Y2G2 431 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 IRGMA1A4Y4 181 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 LGI1O95970 557 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CHRM4P08173 479 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CHRM5P08912 532 aaPredicted RBP17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CLCNKAP51800 687 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CSNK1G2P78368 415 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 LSM11P83369 360 aaKnown RBP eCLIP17.65■□□□□ 0.42
CPSF3-201ENST00000238112 DAB2P98082 770 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CDK3Q00526 305 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF234Q14588 700 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 TAB1Q15750 504 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 ENTPD8Q5MY95 495 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 BHLHB9Q6PI77 547 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 ETFBKMTQ8IXQ9 262 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 SUN3Q8TAQ9 357 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 TEX47Q8TBZ9 253 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 KCTD7Q96MP8 289 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 GPA33Q99795 319 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 OR2B2Q9GZK3 357 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 BCL2L10Q9HD36 194 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 GLOD5A6NK44 160 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 PPM1DO15297 605 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CLEC3AO75596 197 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 P2RY2P41231 377 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 BNC1Q01954 994 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 GPR19Q15760 415 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 SLC36A4Q6YBV0 504 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 CREB3L4Q8TEY5 395 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 POF1BQ8WVV4 589 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 LGR4Q9BXB1 951 aa17.65■□□□□ 0.42
CPSF3-201ENST00000238112 NUP210Q8TEM1 1887 aaPredicted RBP17.65■□□□□ 0.42
CPSF3-201ENST00000238112 LAMA3Q16787 3333 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 A0A1W2PQL4 384 aaPredicted RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 WASHC1A8K0Z3 465 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 C1QTNF3-AMACRE9PGA6 284 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 PRKRAO75569 313 aaKnown RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 ERAL1O75616 437 aaKnown RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 APOL3O95236 402 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 HNRNPA1P09651 372 aaKnown RBP eCLIP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 ACP2P11117 423 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 TCEA1P23193 301 aaKnown RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 SLC9A3P48764 834 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 TAS2R38P59533 333 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 UBE3AQ05086 875 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 RAB40BQ12829 278 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 LASP1Q14847 261 aaKnown RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 UAP1L1Q3KQV9 507 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 GPAT3Q53EU6 434 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 PDZK1Q5T2W1 519 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 XKRXQ6PP77 449 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 WASH2PQ6VEQ5 465 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 GATAD2AQ86YP4 633 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 LINC01555Q8NAE3 123 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 TMEM163Q8TC26 289 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 C1GALT1C1Q96EU7 318 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 RNFT2Q96EX2 444 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 DIRAS2Q96HU8 199 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 ZFYVE19Q96K21 471 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 FERD3LQ96RJ6 166 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 EGLN3Q9H6Z9 239 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 NOTCH4Q99466 2003 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 LRIT2A6NDA9 550 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 FABP12A6NFH5 140 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 STK25O00506 426 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 AP3D1O14617 1153 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 CASC3O15234 703 aaKnown RBP17.64■□□□□ 0.41
CPSF3-201ENST00000238112 PRODHO43272 600 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 EPPINO95925 133 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 CLEC2LP0C7M8 214 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 MSL3P1P0C860 447 aa17.64■□□□□ 0.41
CPSF3-201ENST00000238112 PTGER1P34995 402 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms