RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CDC42P60953 191 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ST3GAL1Q11201 340 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF57Q68EA5 555 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 FAM180BQ6P0A1 224 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 VASH2Q86V25 355 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 HPS6Q86YV9 775 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RASGEF1CQ8N431 466 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 KAT2AQ92830 837 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PTCD3Q96EY7 689 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 EBPLQ9BY08 206 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ISCUQ9H1K1 167 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DTLQ9NZJ0 730 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MED11Q9P086 117 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CCL26Q9Y258 94 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 A0A0A6YYC8 382 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM120BA0PK00 339 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C5orf67F2Z3F1 127 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 I3L1I5 382 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PGRMC2O15173 223 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 YY2O15391 372 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PLIN3O60664 434 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MAGP20916 626 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MATN1P21941 496 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 GCSHP23434 173 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CRISP1P54107 249 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RBBP4Q09028 425 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 EXOSC6Q5RKV6 272 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NAPRTQ6XQN6 538 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZBTB49Q6ZSB9 765 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 LRRTM3Q86VH5 581 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TIGD4Q8IY51 512 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 POC5Q8NA72 575 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DNAJA4Q8WW22 397 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MTG2Q9H4K7 406 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CXorf56Q9H5V9 222 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 APOBEC3GQ9HC16 384 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 COQ4Q9Y3A0 265 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NRAPQ86VF7 1730 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 FUOMA2VDF0 154 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C2orf72A6NCS6 295 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 GALR3O60755 368 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TBX10O75333 385 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PDYNP01213 254 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TACSTD2P09758 323 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DBTP11182 482 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RPS3P23396 243 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 FASP25445 335 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CHRNA4P43681 627 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SLC6A8P48029 635 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RPL14P50914 215 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SNRPD2P62316 118 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NNATQ16517 81 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RFX4Q33E94 735 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 GRHL3Q8TE85 626 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SLC37A2Q8TED4 501 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NTMT1Q9BV86 223 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RBM24Q9BX46 236 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NUAK2Q9H093 628 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RNF38Q9H0F5 515 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SLC6A20Q9NP91 592 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ATXN10Q9UBB4 475 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TRAF6Q9Y4K3 522 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 XIRP1Q702N8 1843 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 K7ESM1 405 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 MRASO14807 208 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 ITGA10O75578 1167 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 IFNW1P05000 195 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 ITGB2P05107 769 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 MMP2P08253 660 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 CKMT1AP12532 417 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 PRPS1L1P21108 318 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 EPHA3P29320 983 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 SKA3Q8IX90 412 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 MMP21Q8N119 569 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 UBE2FQ969M7 185 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 GPR87Q9BY21 358 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 TMEM9Q9P0T7 183 aa4.78□□□□□ -1.65
SCN1A-218ENST00000640036 SLC22A3O75751 556 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 PIAS2O75928 621 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 HK1P19367 917 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 ACVR2AP27037 513 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 MGAT3Q09327 533 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 LASP1Q14847 261 aaKnown RBP4.77□□□□□ -1.65
SCN1A-218ENST00000640036 ARHGAP19Q14CB8 494 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 PRAMEF8Q5VWM4 474 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 PRAMEF7Q5VXH5 474 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 CARD17Q5XLA6 110 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 MON1BQ7L1V2 547 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF765Q7L2R6 523 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 MRPL21Q7Z2W9 205 aaKnown RBP4.77□□□□□ -1.65
SCN1A-218ENST00000640036 TRIM73Q86UV7 250 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 KIAA1958Q8N8K9 716 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 GATSQ8NAP1 163 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 PROKR2Q8NFJ6 384 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 TSGA13Q96PP4 275 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 SLC6A17Q9H1V8 727 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 UCKL1Q9NWZ5 548 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 SIX4Q9UIU6 781 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 A0A087WUU8 490 aa4.77□□□□□ -1.65
SCN1A-218ENST00000640036 LOC102725191A0A1B0GVB3 256 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms