RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NUDT4Q9NZJ9 180 aa17.72■□□□□ 0.43
CLN3-262ENST00000637699 JMJD1CQ15652 2540 aa17.72■□□□□ 0.43
CLN3-262ENST00000637699 DOCK7Q96N67 2140 aa17.72■□□□□ 0.43
CLN3-262ENST00000637699 A0A1W2PPR1 153 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 A0A1W2PS29 197 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 EFCAB8A8MWE9 144 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 ERN1O75460 977 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 IL18BPO95998 194 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 FAM58BPP0C7Q3 252 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 SLC35E2BP0CK96 405 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 SLC35E2P0CK97 266 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 TMIGD3P0DMS9 266 aaPredicted RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 EPB42P16452 691 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 PIK3CBP42338 1070 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 CASP3P42574 277 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 TMED10P49755 219 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 NAGLUP54802 743 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 NRG3P56975 720 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 PCDH1Q08174 1060 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 FOXF2Q12947 444 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 RCAN2Q14206 197 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 SETDB1Q15047 1291 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 MRM1Q6IN84 353 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 CYP20A1Q6UW02 462 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 LUZP2Q86TE4 346 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 ISCA2Q86U28 154 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 YRDCQ86U90 279 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 VWA5B2Q8N398 1253 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 PYROXD1Q8WU10 500 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 SECISBP2Q96T21 854 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 CPNE1Q99829 537 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 ZNF717Q9BY31 904 aaPredicted RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 WDR41Q9HAD4 459 aa17.71■□□□□ 0.43
CLN3-262ENST00000637699 BEX4Q9NWD9 120 aaPredicted RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 LYARQ9NX58 379 aaKnown RBP17.71■□□□□ 0.43
CLN3-262ENST00000637699 FN1P02751 2386 aaKnown RBP17.71■□□□□ 0.42
CLN3-262ENST00000637699 A0A0A6YYD5 115 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 GOSR1O95249 250 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 AIFM1O95831 613 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 GBAP04062 536 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 PTX3P26022 381 aaPredicted RBP17.7■□□□□ 0.42
CLN3-262ENST00000637699 GALNSP34059 522 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 BSGP35613 385 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 SOX18P35713 384 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 GP5P40197 560 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 SLCO1A2P46721 670 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 RPP38P78345 283 aaKnown RBP17.7■□□□□ 0.42
CLN3-262ENST00000637699 DLG1Q12959 904 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 ZKSCAN8Q15776 578 aaPredicted RBP17.7■□□□□ 0.42
CLN3-262ENST00000637699 RAPH1Q70E73 1250 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 FAM83FQ8NEG4 500 aaPredicted RBP17.7■□□□□ 0.42
CLN3-262ENST00000637699 DACH2Q96NX9 599 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 NAPGQ99747 312 aaPredicted RBP17.7■□□□□ 0.42
CLN3-262ENST00000637699 CXorf21Q9HAI6 301 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 GALNT8Q9NY28 637 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 SNX24Q9Y343 169 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 ANGPTL3Q9Y5C1 460 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 SAR1BQ9Y6B6 198 aa17.7■□□□□ 0.42
CLN3-262ENST00000637699 PGRMC2O15173 223 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 CT62P0C5K7 136 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 CYP4B1P13584 511 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 CPA2P48052 419 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 SHEQ5VZ18 495 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 TIGD3Q6B0B8 471 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 PLXDC2Q6UX71 529 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 GALNT12Q8IXK2 581 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ZNF615Q8N8J6 731 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 OR1J4Q8NGS1 313 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ZPLD1Q8TCW7 415 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 UBTD2Q8WUN7 234 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 SLC44A1Q8WWI5 657 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ADIPOR1Q96A54 375 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ARSGQ96EG1 525 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 TMEM41AQ96HV5 264 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ATOH8Q96SQ7 321 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 OR10A5Q9H207 317 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 DDX31Q9H8H2 851 aaKnown RBP17.69■□□□□ 0.42
CLN3-262ENST00000637699 METTL7AQ9H8H3 244 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 ACTR8Q9H981 624 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 NMRAL1Q9HBL8 299 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 SAYSD1Q9NPB0 183 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 PCDHGA11Q9Y5H2 935 aa17.69■□□□□ 0.42
CLN3-262ENST00000637699 SH3D21A4FU49 640 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 C2orf72A6NCS6 295 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 CASKO14936 926 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 KERAO60938 352 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 LY6G6DO95868 133 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 ACTL6AO96019 429 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 HEXAP06865 529 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 KRT15P19012 456 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 PIK3R1P27986 724 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 ABCD3P28288 659 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 PTPN6P29350 595 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 ARFIP1P53367 373 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 PHEXP78562 749 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 SRYQ05066 204 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 FUT7Q11130 342 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 LIPJQ5W064 366 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 DESI1Q6ICB0 168 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 ANGPTL8Q6UXH0 198 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms