RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 ZNF615Q8N8J6 731 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 PNPLA2Q96AD5 504 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 MFRPQ9BY79 579 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 SLAMF7Q9NQ25 335 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 SH3BP4Q9P0V3 963 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 B3GNT3Q9Y2A9 372 aa18.84■□□□□ 0.61
PTCD3-220ENST00000627371 EXPH5Q8NEV8 1989 aa18.83■□□□□ 0.61
PTCD3-220ENST00000627371 ITGA10O75578 1167 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 SLITRK5O94991 958 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 F10P00742 488 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 PCSK2P16519 638 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 PRPS1L1P21108 318 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 TNFSF10P50591 281 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 CLDN8P56748 225 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 MRPS35P82673 323 aaKnown RBP18.83■□□□□ 0.6
PTCD3-220ENST00000627371 EBPQ15125 230 aaKnown RBP18.83■□□□□ 0.6
PTCD3-220ENST00000627371 TLR1Q15399 786 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 MPEG1Q2M385 716 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 SLC9B1Q4ZJI4 515 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 SLC29A4Q7RTT9 530 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 SPATA19Q7Z5L4 167 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 RIMKLAQ8IXN7 391 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 ACTRT2Q8TDY3 377 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 ERP27Q96DN0 273 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 AMDHD1Q96NU7 426 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 OR10A5Q9H207 317 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 GLIPR2Q9H4G4 154 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 MAPRE3Q9UPY8 281 aa18.83■□□□□ 0.6
PTCD3-220ENST00000627371 YARS2Q9Y2Z4 477 aaKnown RBP18.83■□□□□ 0.6
PTCD3-220ENST00000627371 NUP214P35658 2090 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 B8ZZF3 427 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TGDSO95455 350 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 CBX7O95931 251 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 ALDOCP09972 364 aaKnown RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TRHRP34981 398 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 CASRP41180 1078 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 FRKP42685 505 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TUBA3CQ13748 450 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TRMT12Q53H54 448 aaKnown RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TUBA3EQ6PEY2 450 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 EPGNQ6UW88 154 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 C16orf47Q6ZP98 133 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 KRTCAP2Q8N6L1 136 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 CATSPER1Q8NEC5 780 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 OR7A2PQ8NGA2 310 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 CIDECQ96AQ7 238 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 UTP23Q9BRU9 249 aaKnown RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 WWTR1Q9GZV5 400 aa18.82■□□□□ 0.6
PTCD3-220ENST00000627371 LIN28AQ9H9Z2 209 aaKnown RBP18.82■□□□□ 0.6
PTCD3-220ENST00000627371 TCP11X1B4DZS4 312 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 WWP2O00308 870 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 PRAMEF2O60811 474 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 EDF1O60869 148 aaKnown RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 DIAPH2O60879 1101 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 BCAS2O75934 225 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 OR2J2O76002 312 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 SORBS2O94875 1100 aaKnown RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 SSR4P51571 173 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 DUSP8Q13202 625 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ZNF169Q14929 603 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 EXOSC7Q15024 291 aaKnown RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ZNF468Q5VIY5 522 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 NXNQ6DKJ4 435 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 Q8NA96 180 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 OR52R1Q8NGF1 315 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 CEP70Q8NHQ1 597 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 C16orf52Q8NHV5 167 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ZFP28Q8NHY6 868 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 KAT2AQ92830 837 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ZBED6CLQ96FA7 236 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 OR52B2Q96RD2 323 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 GAL3ST4Q96RP7 486 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 RASL10BQ96S79 203 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 PRPF18Q99633 342 aaKnown RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 TRIM45Q9H8W5 580 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ACSS1Q9NUB1 689 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ATAD3AQ9NVI7 634 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 AIG1Q9NVV5 245 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 ANKRD10Q9NXR5 420 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 BCAP29Q9UHQ4 241 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 CFL2Q9Y281 166 aa18.81■□□□□ 0.6
PTCD3-220ENST00000627371 HEMK1Q9Y5R4 338 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-220ENST00000627371 TRAV17A0A0B4J275 112 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 ANKRD28O15084 1053 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 SUV39H1O43463 412 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 PLOD3O60568 738 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 IFI6P09912 130 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 LAMP1P11279 417 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 CD96P40200 585 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 CYB561P49447 251 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 ST13P50502 369 aaKnown RBP18.8■□□□□ 0.6
PTCD3-220ENST00000627371 HLCSP50747 726 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 OC90Q02509 493 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-220ENST00000627371 PLEKHN1Q494U1 663 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-220ENST00000627371 COLEC12Q5KU26 742 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 CPTPQ5TA50 214 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 FHL5Q5TD97 284 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 CAMKMTQ7Z624 323 aa18.8■□□□□ 0.6
PTCD3-220ENST00000627371 TMEM156Q8N614 296 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms