RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 STOML3Q8TAV4 291 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 AURKBQ96GD4 344 aaPredicted RBP19.52■□□□□ 0.71
UPF1-207ENST00000599848 DOHHQ9BU89 302 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 SH2B3Q9UQQ2 575 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 RNF215Q9Y6U7 377 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 GNAO1P09471 354 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 STON2Q8WXE9 905 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 CDC6Q99741 560 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 POLE4Q9NR33 117 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 PARPBPQ9NWS1 579 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 MALT1Q9UDY8 824 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 IFNA1P01562 189 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 CSNK1DP48730 415 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 ERVK-16P61578 105 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 SLC14A2Q15849 920 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 OR1J2Q8NGS2 313 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 MS4A4EQ96PG1 132 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 DNAJB11Q9UBS4 358 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 SLC35A3Q9Y2D2 325 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 TEX264Q9Y6I9 313 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 AZGP1P25311 298 aaKnown RBP19.51■□□□□ 0.71
UPF1-207ENST00000599848 UFM1P61960 85 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 FAM46BQ96A09 425 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 NUDT15Q9NV35 164 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 GDF1P27539 372 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 PTPRRQ15256 657 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 TMBIM1Q969X1 311 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 PIP5K1AQ99755 562 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 PPP1R14DQ9NXH3 145 aa19.51■□□□□ 0.71
UPF1-207ENST00000599848 HSD17B12Q53GQ0 312 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 CCSAPQ6IQ19 270 aaPredicted RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 SCML4Q8N228 414 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 PQLC3Q8N755 202 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 DCBLD2Q96PD2 775 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 LMF2Q9BU23 707 aaKnown RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 EMC9Q9Y3B6 208 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 MBLAC1A4D2B0 266 aaPredicted RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 B8ZZF3 427 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 CH25HO95992 272 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 CD70P32970 193 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 DOC2AQ14183 400 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 NFATC4Q14934 902 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 RSU1Q15404 277 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 CES4AQ5XG92 561 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 PDZD3Q86UT5 571 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 RAB8BQ92930 207 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 KLHL42Q9P2K6 505 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 KCPQ6ZWJ8 1503 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 hCG_1809904A0A1W2PP81 198 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 A0A1W2PPE2 198 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 A0A1W2PR64 198 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 A0A1W2PRV1 198 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 EI24O14681 340 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 VNN2O95498 520 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 NELFEP18615 380 aaKnown RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 VASPP50552 380 aaPredicted RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 AFF3P51826 1226 aaKnown RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 RAB31Q13636 194 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 ZADH2Q8N4Q0 377 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 F2RL3Q96RI0 385 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 SYT3Q9BQG1 590 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 LMO7Q8WWI1 1683 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 SRPX2O60687 465 aaPredicted RBP19.5■□□□□ 0.71
UPF1-207ENST00000599848 ACPPP15309 386 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 TLE3Q04726 772 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 TCEAL1Q15170 157 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 LRIT3Q3SXY7 679 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 ALOXE3Q9BYJ1 711 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 POTEKPQ9BYX7 375 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 ST14Q9Y5Y6 855 aa19.5■□□□□ 0.71
UPF1-207ENST00000599848 D6RAR5 112 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 LRRN3E7EW58 273 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 HOXA9P31269 272 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 GINS1Q14691 196 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 BCL2L15Q5TBC7 163 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 MRPL38Q96DV4 380 aaKnown RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 UTP23Q9BRU9 249 aaKnown RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 ENKD1Q9H0I2 346 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 LRRN3Q9H3W5 708 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 COQ3Q9NZJ6 369 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 MT-CO2P00403 227 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 CRYZQ08257 329 aaKnown RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 MFSD6LQ8IWD5 586 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 CNN2Q99439 309 aaKnown RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 MARCH7Q9H992 704 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 AGPAT4Q9NRZ5 378 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 GBAP04062 536 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 TMEM107Q6UX40 140 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 OR4K1Q8NGD4 311 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 GRPEL2Q8TAA5 225 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 ZUFSPQ96AP4 578 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 MRGPRX2Q96LB1 330 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 IP6K3Q96PC2 410 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 COQ10BQ9H8M1 238 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 EIF2S3LQ2VIR3 472 aaKnown RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 PGAP3Q96FM1 320 aaPredicted RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 CENPOQ9BU64 300 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 A0A1W2PPW3 197 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 A6NL46 340 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 RPP30P78346 268 aaKnown RBP19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms