RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	LIPT1	Q9Y234	373 aa		10.62	□□□□□ -0.71
CLK3-222	ENST00000568232	MAGED1	Q9Y5V3	778 aa	Predicted RBP	10.62	□□□□□ -0.71
CLK3-222	ENST00000568232	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	IGHV4-30-2	A0A087WSY4	118 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232		A0A096LNT2	108 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	C2orf92	A0A1B0GVN3	265 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	WASHC1	A8K0Z3	465 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CAPN14	A8MX76	684 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	MIF4GD	A9UHW6	222 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CBFA2T2	O43439	604 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	SH3BGRL	O75368	114 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	PRKRA	O75569	313 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CRH	P06850	196 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	TPSB2	P20231	275 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	TBXA2R	P21731	343 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CPN2	P22792	545 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	ATP5A1	P25705	553 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	GABRB3	P28472	473 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	THBS2	P35442	1172 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	GCK	P35557	465 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	GFRA1	P56159	465 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CLDN18	P56856	261 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	IL2	P60568	153 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	TBX2	Q13207	712 aa	Predicted RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	TPSAB1	Q15661	275 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	EXOC3L2	Q2M3D2	409 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	TMEM249	Q2WGJ8	235 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	GPATCH11	Q8N954	259 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	ACOT4	Q8N9L9	421 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	NEUROG1	Q92886	237 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	ZNF845	Q96IR2	970 aa	Predicted RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	CALR3	Q96L12	384 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	GALNT9	Q9HCQ5	603 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	ZNF490	Q9ULM2	529 aa	Predicted RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	REXO2	Q9Y3B8	237 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	MED12L	Q86YW9	2145 aa		10.61	□□□□□ -0.71
CLK3-222	ENST00000568232	SLC22A20	A6NK97	555 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	HCRTR2	O43614	444 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	PRAMEF4	O60810	478 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	WDR47	O94967	919 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	THBS1	P07996	1170 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	DANCR	P0C864	163 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	ALOX15	P16050	662 aa	Predicted RBP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	ZNF708	P17019	499 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	GNAZ	P19086	355 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	TCEA1	P23193	301 aa	Known RBP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	DPP4	P27487	766 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	CFP	P27918	469 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SSTR4	P31391	388 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	GMPR	P36959	345 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SLC6A12	P48065	614 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	KCNC1	P48547	511 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	PLIN5	Q00G26	463 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	FAP	Q12884	760 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SETDB1	Q15047	1291 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	PPP1R3A	Q16821	1122 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	UBAP2	Q5T6F2	1119 aa	Known RBP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	PRAMEF9	Q5VWM5	478 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	ANKRD22	Q5VYY1	191 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	C18orf63	Q68DL7	685 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	ALKBH2	Q6NS38	261 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SCIMP	Q6UWF3	145 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	IFNE	Q86WN2	208 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	WFDC8	Q8IUA0	241 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	CCDC170	Q8IYT3	715 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	KRT78	Q8N1N4	520 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	AGGF1	Q8N302	714 aa	eCLIP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	BBOF1	Q8ND07	529 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	FIG4	Q92562	907 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	CAVIN3	Q969G5	261 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	KCNC2	Q96PR1	638 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	NODAL	Q96S42	347 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SORBS1	Q9BX66	1292 aa	Known RBP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	OR2B2	Q9GZK3	357 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	RPF2	Q9H7B2	306 aa	Known RBP	10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	METTL7A	Q9H8H3	244 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	SNX15	Q9NRS6	342 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	TMEM160	Q9NX00	188 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	LPAR3	Q9UBY5	353 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	RNF112	Q9ULX5	631 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	DLGAP4	Q9Y2H0	992 aa		10.6	□□□□□ -0.71
CLK3-222	ENST00000568232	FAM234B	A2RU67	622 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	OR6C76	A6NM76	312 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	SAP18	O00422	153 aa	Known RBP	10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	SSX4	O60224	188 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	ICOSLG	O75144	302 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	ENO2	P09104	434 aa	Predicted RBP	10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	SRD5A1	P18405	259 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	PTGDS	P41222	190 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	KCNJ1	P48048	391 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	CASP9	P55211	416 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	CDK16	Q00536	496 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	TRIP13	Q15645	432 aa	Predicted RBP	10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	SPRED3	Q2MJR0	410 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	OR2A2	Q6IF42	318 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	GSTA5	Q7RTV2	222 aa		10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	10.59	□□□□□ -0.71
CLK3-222	ENST00000568232	ST13P4	Q8IZP2	240 aa	Predicted RBP	10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms