RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PDZD2O15018 2839 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 AKAP9Q99996 3911 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 C2orf92A0A1B0GVN3 265 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 OR14I1A6ND48 311 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 ACOT7O00154 380 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 AQP7O14520 342 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 SUSD5O60279 629 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TRIM3O75382 744 aaPredicted RBP13.67□□□□□ -0.22
CLN3-213ENST00000565047 TNFRSF8P28908 595 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 SERPINB3P29508 390 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 PLGLB1Q02325 96 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 CSTF3Q12996 717 aaKnown RBP13.67□□□□□ -0.22
CLN3-213ENST00000565047 LCP2Q13094 533 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 FNDC7Q5VTL7 733 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 RTL6Q6ICC9 239 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 GALNT18Q6P9A2 607 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 FAM111BQ6SJ93 734 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TMEM64Q6YI46 380 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 GPRIN3Q6ZVF9 776 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TDRPQ86YL5 185 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 SLC22A9Q8IVM8 553 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 MCEMP1Q8IX19 187 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 CNPY4Q8N129 248 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 GAL3ST4Q96RP7 486 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TRIM8Q9BZR9 551 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TP63Q9H3D4 680 aaPredicted RBP13.67□□□□□ -0.22
CLN3-213ENST00000565047 ZNF703Q9H7S9 590 aaPredicted RBP13.67□□□□□ -0.22
CLN3-213ENST00000565047 ZFP64Q9NPA5 681 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 PNPLA3Q9NST1 481 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 TBK1Q9UHD2 729 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 DCDC2Q9UHG0 476 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 MCM8Q9UJA3 840 aa13.67□□□□□ -0.22
CLN3-213ENST00000565047 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.67□□□□□ -0.22
CLN3-213ENST00000565047 NPIPA2E9PIF3 369 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 NPIPA3F8WFD2 350 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ULK1O75385 1050 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ESRRBO95718 433 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 CBX7O95931 251 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 KRT6AP02538 564 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 PROCP04070 461 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 KRT6BP04259 564 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 GPX3P22352 226 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 PTGER4P35408 488 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 FEN1P39748 380 aaKnown RBP13.66□□□□□ -0.22
CLN3-213ENST00000565047 KRT6CP48668 564 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 FOXA1P55317 472 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 PKNOX1P55347 436 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 TFF3Q07654 80 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 SLC10A1Q14973 349 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 PRAMEF20Q5VT98 475 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 PAOXQ6QHF9 649 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ZYG11AQ6WRX3 759 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 GBP7Q8N8V2 638 aaPredicted RBP13.66□□□□□ -0.22
CLN3-213ENST00000565047 METTL6Q8TCB7 284 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 SPPL2AQ8TCT8 520 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 APIPQ96GX9 242 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 KCNA7Q96RP8 456 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ENKD1Q9H0I2 346 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 TNFRSF12AQ9NP84 129 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ACKR4Q9NPB9 350 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 NMRK1Q9NWW6 199 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 SPRR3Q9UBC9 169 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 TIMM22Q9Y584 194 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 FAM215AQ9Y5M1 114 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 NPFFR2Q9Y5X5 522 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 NCKAP5O14513 1909 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ABCA12Q86UK0 2595 aa13.66□□□□□ -0.22
CLN3-213ENST00000565047 ATP6AP2A0A1C7CYW4 349 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 PLIN3O60664 434 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 HCN1O60741 890 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 GUCY1B2O75343 617 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 ATP6AP2O75787 350 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 IGFBP2P18065 325 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 CSNK2A2P19784 350 aaPredicted RBP13.65□□□□□ -0.22
CLN3-213ENST00000565047 NT5EP21589 574 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 EMDP50402 254 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 FBXW4P57775 412 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 LTB4RQ15722 352 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 CEBPEQ15744 281 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 PRSS53Q2L4Q9 553 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 TRMT12Q53H54 448 aaKnown RBP13.65□□□□□ -0.22
CLN3-213ENST00000565047 BICRALQ6AI39 1079 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 TMEM211Q6ICI0 200 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 FAM180BQ6P0A1 224 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 TAGAPQ8N103 731 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 EID3Q8N140 333 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 VWA5B2Q8N398 1253 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 LILRB4Q8NHJ6 448 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLN3-213ENST00000565047 SMC6Q96SB8 1091 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 SECISBP2Q96T21 854 aaKnown RBP13.65□□□□□ -0.22
CLN3-213ENST00000565047 SPOCK3Q9BQ16 436 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 ANGPTL4Q9BY76 406 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 NXF5Q9H1B4 397 aaKnown RBP13.65□□□□□ -0.22
CLN3-213ENST00000565047 UBQLN3Q9H347 655 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 QPCTLQ9NXS2 382 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 TNFRSF10DQ9UBN6 386 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 RNF6Q9Y252 685 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 DNAJC13O75165 2243 aa13.65□□□□□ -0.22
CLN3-213ENST00000565047 BCKDKO14874 412 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms