RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TMEM45AQ9NWC5 275 aa15.46■□□□□ 0.07
CUX1-213ENST00000549414 CNIH4Q9P003 139 aa15.46■□□□□ 0.07
CUX1-213ENST00000549414 APOBEC3BQ9UH17 382 aaKnown RBP15.46■□□□□ 0.07
CUX1-213ENST00000549414 PCDHGA2Q9Y5H1 932 aa15.46■□□□□ 0.07
CUX1-213ENST00000549414 ZNF831Q5JPB2 1677 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 COQ9O75208 318 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 DHFRP00374 187 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 FCER2P06734 321 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 C21orf33P30042 268 aaPredicted RBP15.46■□□□□ 0.06
CUX1-213ENST00000549414 PCGF2P35227 344 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 TUBA1BP68363 451 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 TUBA1AQ71U36 451 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 ANKRD33Q7Z3H0 272 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 TRIM46Q7Z4K8 759 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 TMCO6Q96DC7 493 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 FAM46AQ96IP4 442 aaKnown RBP15.46■□□□□ 0.06
CUX1-213ENST00000549414 SECISBP2Q96T21 854 aaKnown RBP15.46■□□□□ 0.06
CUX1-213ENST00000549414 RACGAP1Q9H0H5 632 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 STARD5Q9NSY2 213 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 CEPT1Q9Y6K0 416 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 SRCAPQ6ZRS2 3230 aa15.46■□□□□ 0.06
CUX1-213ENST00000549414 LINC01553A4QN01 128 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 MNDAP41218 407 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 PFN3P60673 137 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 LCTLQ6UWM7 567 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SLCO4C1Q6ZQN7 724 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SLC15A4Q8N697 577 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 CHFRQ96EP1 664 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SLC2A4RGQ9NR83 387 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 A0A1W2PPK0 400 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 LAMTOR5O43504 91 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 KIAA0513O60268 411 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 TMEM44Q2T9K0 475 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 NHSL2Q5HYW2 709 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 C6orf132Q5T0Z8 1188 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 ARHGAP40Q5TG30 622 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 ADNP2Q6IQ32 1131 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 TMIEQ8NEW7 156 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 OSTF1Q92882 214 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SLC6A17Q9H1V8 727 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 TMEM184CQ9NVA4 438 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 TBX21Q9UL17 535 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SYPL1Q16563 259 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 PROKR2Q8NFJ6 384 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 FAM3CQ92520 227 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 LIPT1Q9Y234 373 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 GPC6Q9Y625 555 aaPredicted RBP15.45■□□□□ 0.06
CUX1-213ENST00000549414 ICE1Q9Y2F5 2266 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 ANTXRLA6NF34 631 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 ATE1O95260 518 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 SEMA4FO95754 770 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 CXCR1P25024 350 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 MICAQ29983 383 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 C22orf42Q6IC83 251 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 TBPL2Q6SJ96 375 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 IKBIPQ70UQ0 350 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 L3MBTL4Q8NA19 623 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 GATAD2BQ8WXI9 593 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 PEX11GQ96HA9 241 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 NECTIN4Q96NY8 510 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 INSM2Q96T92 566 aaPredicted RBP15.45■□□□□ 0.06
CUX1-213ENST00000549414 RPRD1BQ9NQG5 326 aaKnown RBP15.45■□□□□ 0.06
CUX1-213ENST00000549414 PRTFDC1Q9NRG1 225 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 ING3Q9NXR8 418 aa15.45■□□□□ 0.06
CUX1-213ENST00000549414 NPIPA5A0A0B4J1W7 369 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NPIPA7E9PJI5 369 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 SCDO00767 359 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 PCDH17O14917 1159 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 GIMD1P0DJR0 217 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NPIPA8P0DM63 369 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 OR2B6P58173 313 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 GFOD2Q3B7J2 385 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 LEXMQ3ZCV2 418 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 ANKDD1AQ495B1 522 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 ABHD11Q8NFV4 315 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 SLC30A2Q9BRI3 323 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NDC1Q9BTX1 674 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 GPR34Q9UPC5 381 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 RAB36O95755 333 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 SLC2A2P11168 524 aaPredicted RBP15.44■□□□□ 0.06
CUX1-213ENST00000549414 ACSL1P33121 698 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 RPS15AP62244 130 aaKnown RBP15.44■□□□□ 0.06
CUX1-213ENST00000549414 TMEM164Q5U3C3 297 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 CBLL1Q75N03 491 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NRMQ8IXM6 262 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NLGN4XQ8N0W4 816 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 ZNF676Q8N7Q3 588 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 FANK1Q8TC84 345 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 GNPDA2Q8TDQ7 276 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 PRSS16Q9NQE7 514 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 FXYD1O00168 92 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 HLA-DPB1P04440 258 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 THEGLP0DJG4 465 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 PORP16435 677 aaPredicted RBP15.44■□□□□ 0.06
CUX1-213ENST00000549414 ZNF33BQ06732 778 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 PON3Q15166 354 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 WSCD2Q2TBF2 565 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 LRIT3Q3SXY7 679 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 DLEU7Q6UYE1 221 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 OLIG3Q7RTU3 272 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms