RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DSCR3O14972 297 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 PIP5K1CO60331 668 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 RB1P06400 928 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 EPHX1P07099 455 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 OSMP13725 252 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 VIPR1P32241 457 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 MNDAP41218 407 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 SMCO1Q147U7 214 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF680Q8NEM1 530 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CD99L2Q8TCZ2 262 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 RBPMSQ93062 196 aaKnown RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 IFT27Q9BW83 186 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 TAS2R10Q9NYW0 307 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CACNG2Q9Y698 323 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF780BQ9Y6R6 833 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 BRWD1Q9NSI6 2320 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 A0A0U1RQF3 1178 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ATG13O75143 517 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CSF3P09919 207 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 PVALBP20472 110 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 RPS25P62851 125 aaKnown RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 OC90Q02509 493 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CRYZQ08257 329 aaKnown RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 MAP4K2Q12851 820 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ADGRG2Q8IZP9 1017 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 NXPE1Q8N323 547 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 PGAP3Q96FM1 320 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 S100A13Q99584 98 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 BTBD1Q9H0C5 482 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 OR2AT4A6NND4 320 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF670-ZNF695F2Z2N8 137 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CCL16O15467 120 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 SCN2BO60939 215 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 KCNK5O95279 499 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 IL1AP01583 271 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ETV3P41162 512 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 KIAA1024LP59773 190 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 GRB14Q14449 540 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 MEDAGQ5VYS4 303 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 SLC27A4Q6P1M0 643 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 PEX13Q92968 403 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 RHBDF1Q96CC6 855 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 AIF1LQ9BQI0 150 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 MTG2Q9H4K7 406 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 TEX10Q9NXF1 929 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 SHROOM3Q8TF72 1996 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SCO2O43819 266 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 GASTP01350 101 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 STATHP02808 62 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 HLA-EP13747 358 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ITGA3P26006 1051 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 PTPN6P29350 595 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 CLVS2Q5SYC1 327 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ZCCHC12Q6PEW1 402 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ST8SIA4Q92187 359 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF566Q969W8 418 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 PSKH2Q96QS6 385 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ERVMER34-1Q9H9K5 563 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 MRPS33Q9Y291 106 aaKnown RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 COL5A3P25940 1745 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 PDCD5O14737 125 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SDHBP21912 280 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 TAF13Q15543 124 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 RTL4Q6ZR62 310 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 PHYKPLQ8IUZ5 450 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ANGPTL6Q8NI99 470 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ARRDC2Q8TBH0 407 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 TRIM36Q9NQ86 728 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 EXOSC1Q9Y3B2 195 aaKnown RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 GTPBP1O00178 669 aaKnown RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SYN3O14994 580 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 MT-ND4P03905 459 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SCG5P05408 212 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ATXN1LP0C7T5 689 aaKnown RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SEMA3BQ13214 749 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 NFATC2Q13469 925 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 GPR50Q13585 617 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 GRK1Q15835 563 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 AGTRAPQ6RW13 159 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ALKAL1Q6UXT8 129 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 CCDC190Q86UF4 302 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 NLRP8Q86W28 1048 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 OR8K3Q8NH51 312 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 ADAMTS15Q8TE58 950 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 MNTQ99583 582 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 CNOT2Q9NZN8 540 aaKnown RBP13.55□□□□□ -0.24
LIMS1-215ENST00000544547 COPS3Q9UNS2 423 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 SNX11Q9Y5W9 270 aa13.55□□□□□ -0.24
LIMS1-215ENST00000544547 LOC100509620A0A075B734 347 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 KANTRA0A1W2PQU2 76 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 CSO75390 466 aaKnown RBP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 TRAPPC2P0DI81 140 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 TRAPPC2BP0DI82 140 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF250P15622 560 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 BDKRB1P46663 353 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 OR4K5Q8NGD3 323 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 SLC35G5Q96KT7 338 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 WRAP53Q9BUR4 548 aaKnown RBP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms