RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MID1IP1Q9NPA3 183 aa10.66□□□□□ -0.7
RTN3-209ENST00000538995 EHD3Q9NZN3 535 aa10.66□□□□□ -0.7
RTN3-209ENST00000538995 BOKQ9UMX3 212 aaPredicted RBP10.66□□□□□ -0.7
RTN3-209ENST00000538995 CHCHD2Q9Y6H1 151 aaPredicted RBP10.66□□□□□ -0.7
RTN3-209ENST00000538995 ZNF780BQ9Y6R6 833 aa10.66□□□□□ -0.7
RTN3-209ENST00000538995 ITPR2Q14571 2701 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CELSR2Q9HCU4 2923 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 GNG14A0A1W2PPG7 69 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 ANKRD33BA6NCL7 494 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 FAM166BA8MTA8 275 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 PRSS44E7EML9 344 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 UBFD1O14562 309 aaKnown RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 TP53I11O14683 189 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CDC40O60508 579 aaKnown RBP eCLIP10.65□□□□□ -0.7
RTN3-209ENST00000538995 ERAL1O75616 437 aaKnown RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 CT62P0C5K7 136 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CPA3P15088 417 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CHN1P15882 459 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 S1PR1P21453 382 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 COL8A1P27658 744 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 TIA1P31483 386 aaKnown RBP eCLIP10.65□□□□□ -0.7
RTN3-209ENST00000538995 NAGLUP54802 743 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 NRG3P56975 720 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 VSNL1P62760 191 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 RPP38P78345 283 aaKnown RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 HEPACAMQ14CZ8 416 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 RPS6KA2Q15349 733 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 PRICKLE4Q2TBC4 344 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 LIPMQ5VYY2 423 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 EMBQ6PCB8 327 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CD163Q86VB7 1156 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 MMP21Q8N119 569 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 TMEM251Q8N6I4 163 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 FAM13CQ8NE31 585 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 OR10G3Q8NGC4 313 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 OR52N2Q8NGI0 321 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 FAM76AQ8TAV0 307 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 ZNF675Q8TD23 568 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 ADIPOR1Q96A54 375 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 CTHRC1Q96CG8 243 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 METTL2AQ96IZ6 378 aaKnown RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 ZNF681Q96N22 645 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 PHF12Q96QT6 1004 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 KCNA7Q96RP8 456 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 TRMOQ9BU70 441 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 TP63Q9H3D4 680 aaPredicted RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 CHST11Q9NPF2 352 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 OXSMQ9NWU1 459 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 QPCTLQ9NXS2 382 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 MAT2BQ9NZL9 334 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 ZNF639Q9UID6 485 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 UTS2RQ9UKP6 389 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 TIMM22Q9Y584 194 aa10.65□□□□□ -0.7
RTN3-209ENST00000538995 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.65□□□□□ -0.7
RTN3-209ENST00000538995 CRYBG3Q68DQ2 2970 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 A0A1B0GVC2 190 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 FOXO6A8MYZ6 492 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 G3V3Y1 287 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ADAM10O14672 748 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 BCKDKO14874 412 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ACOX3O15254 700 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 HNRNPRO43390 633 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 SUSD5O60279 629 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 HCN1O60741 890 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 CRCPO75575 148 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 RSL1D1O76021 490 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 TPOP07202 933 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 IL3P08700 152 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 NAGAP17050 411 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 GPX3P22352 226 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 FEN1P39748 380 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 DNASE1L1P49184 302 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ALDH9A1P49189 494 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 NR0B1P51843 470 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 DCAF7P61962 342 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 KCNJ2P63252 427 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 PSPHP78330 225 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 RAE1P78406 368 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 HMGCS1Q01581 520 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ZNF763Q0D2J5 394 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 MGAT2Q10469 447 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ZNF630Q2M218 657 aaPredicted RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 ZNF787Q6DD87 383 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 WDR93Q6P2C0 686 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 RNF165Q6ZSG1 346 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 TRILQ7L0X0 811 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 TRIM46Q7Z4K8 759 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 CCDC63Q8NA47 563 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 DOK4Q8TEW6 326 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 CNRIP1Q96F85 164 aaPredicted RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 APIPQ96GX9 242 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 APOPT1Q96IL0 206 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 BRINP2Q9C0B6 783 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 IQCGQ9H095 443 aaKnown RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 DEFB127Q9H1M4 99 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 ZNF703Q9H7S9 590 aaPredicted RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 ZFP64Q9NPA5 681 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 GIMAP4Q9NUV9 329 aa10.64□□□□□ -0.71
RTN3-209ENST00000538995 TUBA8Q9NY65 449 aaPredicted RBP10.64□□□□□ -0.71
RTN3-209ENST00000538995 B4GALT7Q9UBV7 327 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms