RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SATL1Q86VE3 508 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 C8orf59Q8N0T1 100 aaPredicted RBP19.44■□□□□ 0.7
VPS28-209ENST00000528142 BBS10Q8TAM1 723 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 COL21A1Q96P44 957 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 OR7D2Q96RA2 312 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 SPACA6W5XKT8 324 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 A0A1B0GVT2 93 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 TRIM64CA6NLI5 447 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 SGK494L7N484 410 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 ASNA1O43681 348 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 SERPINB7O75635 380 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 IFNW1P05000 195 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 PORP16435 677 aaPredicted RBP19.44■□□□□ 0.7
VPS28-209ENST00000528142 LIMS1P48059 325 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 HMGA2P52926 109 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 CRISP3P54108 245 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 TUBA4AP68366 448 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 SHC2P98077 582 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 OR2L13Q8N349 312 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 RASSF5Q8WWW0 418 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 COL26A1Q96A83 441 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 ZNF285Q96NJ3 590 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 RAB33BQ9H082 229 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 EPB41L1Q9H4G0 881 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 ERVMER34-1Q9H9K5 563 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 ACER3Q9NUN7 267 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 EPHA6Q9UF33 1036 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 PCDHGA8Q9Y5G5 932 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 SCN3AQ9NY46 2000 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 NCOR1O75376 2440 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 FAM227AF5H4B4 570 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 FGF17O60258 216 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 TDGF1P13385 188 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 RHCEP18577 417 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 EPHA4P54764 986 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 NR1H2P55055 460 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 CDH15P55291 814 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 GFERP55789 205 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 RAB38P57729 211 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 SPIBQ01892 262 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 GNA13Q14344 377 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 C6orf132Q5T0Z8 1188 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 PRAMEF8Q5VWM4 474 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 PRAMEF7Q5VXH5 474 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 FAM111BQ6SJ93 734 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 OLIG3Q7RTU3 272 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 ATG16L2Q8NAA4 619 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 OR9A4Q8NGU2 314 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 PROX1Q92786 737 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 TANKQ92844 425 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 ZNF354BQ96LW1 612 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 ACTRT3Q9BYD9 372 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 GRIP2Q9C0E4 1043 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 ANKHQ9HCJ1 492 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 RNF215Q9Y6U7 377 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 CEP192Q8TEP8 1941 aa19.43■□□□□ 0.7
VPS28-209ENST00000528142 CCDC163A0A0D9SF12 145 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 VGLL3A8MV65 326 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 MED26O95402 600 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 GPR75O95800 540 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 ETS2P15036 469 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 CDH12P55289 794 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 IL18R1Q13478 541 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 ZNF628Q5EBL2 1059 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 ZNF691Q5VV52 312 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 MAML2Q8IZL2 1156 aaPredicted RBP19.42■□□□□ 0.7
VPS28-209ENST00000528142 SLC25A45Q8N413 288 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 GIPC3Q8TF64 312 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 CXorf56Q9H5V9 222 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 EQTNQ9NQ60 294 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 DDX18Q9NVP1 670 aaKnown RBP19.42■□□□□ 0.7
VPS28-209ENST00000528142 TUBA8Q9NY65 449 aaPredicted RBP19.42■□□□□ 0.7
VPS28-209ENST00000528142 PTGFRNQ9P2B2 879 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 SEC14L3Q9UDX4 400 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 KCND3Q9UK17 655 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 FAM32AQ9Y421 112 aaKnown RBP19.42■□□□□ 0.7
VPS28-209ENST00000528142 CSNK1G3Q9Y6M4 447 aa19.42■□□□□ 0.7
VPS28-209ENST00000528142 A0A0G2JPF8 293 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 RHPN2P1A8MT19 583 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 HNRNPCL2B2RXH8 293 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 HNRNPCL3B7ZW38 293 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 E9PQ18 207 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FFAR1O14842 300 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 LDB3O75112 727 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 UGT2B11O75310 529 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 RDH16O75452 317 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 ATP1B1P05026 303 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 GIMD1P0DJR0 217 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 HNRNPCL4P0DMR1 293 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FUT4P22083 530 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 ELK4P28324 431 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 ISL1P61371 349 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 ID2Q02363 134 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 EXOC3L2Q2M3D2 409 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 NADK2Q4G0N4 442 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FHL5Q5TD97 284 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 MFSD12Q6NUT3 480 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 KRT73Q86Y46 540 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 OR52J3Q8NH60 311 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 TGM7Q96PF1 710 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms