RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KLHL3Q9UH77 587 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 HCN2Q9UL51 889 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 KLHL20Q9Y2M5 609 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 A0A0G2JPF8 293 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 PDZK1P1A8MUH7 402 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 HNRNPCL2B2RXH8 293 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 HNRNPCL3B7ZW38 293 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 M0R3H8 397 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 CASC3O15234 703 aaKnown RBP20.04■□□□□ 0.8
VPS28-205ENST00000526204 PPM1DO15297 605 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 CSO75390 466 aaKnown RBP20.04■□□□□ 0.8
VPS28-205ENST00000526204 KAT7O95251 611 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 TP53P04637 393 aaPredicted RBP20.04■□□□□ 0.8
VPS28-205ENST00000526204 HNRNPCL4P0DMR1 293 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 ALOX12P18054 663 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 PCYT1AP49585 367 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 TMED10P49755 219 aaKnown RBP20.04■□□□□ 0.8
VPS28-205ENST00000526204 DEFA1P59665 94 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 DEFA3P59666 94 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 SLAMF1Q13291 335 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 KRT33BQ14525 404 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 IRF4Q15306 451 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 PRAMEF8Q5VWM4 474 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 PRAMEF7Q5VXH5 474 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 FLCNQ8NFG4 579 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 OR4K5Q8NGD3 323 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 HERVK_113Q902F9 699 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 PRRC1Q96M27 445 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 RSPH9Q9H1X1 276 aaPredicted RBP20.04■□□□□ 0.8
VPS28-205ENST00000526204 XKR8Q9H6D3 395 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 WBP1LQ9NX94 342 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 TVP23BQ9NYZ1 205 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 GDE1Q9NZC3 331 aa20.04■□□□□ 0.8
VPS28-205ENST00000526204 KCNJ13O60928 360 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ADH1BP00325 375 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 GSTM3P21266 225 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 HIST1H1TP22492 207 aaPredicted RBP20.03■□□□□ 0.8
VPS28-205ENST00000526204 TIE1P35590 1138 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 BCL6P41182 706 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ABATP80404 500 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 FAM83FQ8NEG4 500 aaPredicted RBP20.03■□□□□ 0.8
VPS28-205ENST00000526204 OR56A1Q8NGH5 318 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 OR9Q1Q8NGQ5 310 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 HTRA1Q92743 480 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 MS4A6EQ96DS6 147 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 CEP19Q96LK0 163 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 AICDAQ9GZX7 198 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 RMI1Q9H9A7 625 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 KCNK12Q9HB15 430 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 INIPQ9NRY2 104 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 CLEC2DQ9UHP7 191 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ASB4Q9Y574 426 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 KIAA0100Q14667 2235 aaKnown RBP20.03■□□□□ 0.8
VPS28-205ENST00000526204 DLGAP3O95886 979 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 CKMT1AP12532 417 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 C5AR1P21730 350 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 MMP11P24347 488 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 GJA4P35212 333 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 AHRP35869 848 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 GIPRP48546 466 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 PRKAG1P54619 331 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 RUNX3Q13761 415 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 C1orf94Q6P1W5 598 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ZER1Q7Z7L7 766 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 COMTD1Q86VU5 262 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 SLC6A18Q96N87 628 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 CCDC32Q9BV29 185 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 CNPPD1Q9BV87 410 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 PINK1Q9BXM7 581 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ASPNQ9BXN1 380 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 KLHL31Q9H511 634 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 EXOSC4Q9NPD3 245 aaKnown RBP20.03■□□□□ 0.8
VPS28-205ENST00000526204 STON1Q9Y6Q2 735 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 MYO7AQ13402 2215 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 PLXND1Q9Y4D7 1925 aa20.03■□□□□ 0.8
VPS28-205ENST00000526204 ERI3O43414 337 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 ERAL1O75616 437 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 DNTTP04053 509 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 CHRM4P08173 479 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 ACADMP11310 421 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 GTF2E2P29084 291 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 SOX3P41225 446 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 MLLT11Q13015 90 aaPredicted RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 GPR19Q15760 415 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 ENTPD8Q5MY95 495 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 MRM1Q6IN84 353 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 HDDC3Q8N4P3 179 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 SRFBP1Q8NEF9 429 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 OR6T1Q8NGN1 323 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 NR4A3Q92570 626 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 SLC30A2Q9BRI3 323 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 POLR2J2Q9GZM3 115 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 KLHL25Q9H0H3 589 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 PRDM7Q9NQW5 492 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 MAN2C1Q9NTJ4 1040 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 NDUFB11Q9NX14 153 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 STUB1Q9UNE7 303 aa20.02■□□□□ 0.8
VPS28-205ENST00000526204 DIMT1Q9UNQ2 313 aaKnown RBP20.02■□□□□ 0.8
VPS28-205ENST00000526204 ANTXRLA6NF34 631 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 MYL12BO14950 172 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms