RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 SLC4A11Q8NBS3 891 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CAMKVQ8NCB2 501 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 WFDC11Q8NEX6 87 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 C2orf15Q8WU43 125 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CCDC107Q8WV48 283 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 TCP11Q8WWU5 503 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ROBO4Q8WZ75 1007 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ESR2Q92731 530 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ZNF501Q96CX3 271 aaPredicted RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 OTUB2Q96DC9 234 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 FER1L6-AS2Q96M78 137 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ZMAT2Q96NC0 199 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 MUS81Q96NY9 551 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 DUX3Q96PT4 197 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 XPO6Q96QU8 1125 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CPNE1Q99829 537 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CCDC3Q9BQI4 270 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ZNF577Q9BSK1 485 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 C19orf24Q9BVV8 132 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 LAT2Q9GZY6 243 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 PSTPIP2Q9H939 334 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 IL1RAPL2Q9NP60 686 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 A4GALTQ9NPC4 353 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 MRPL40Q9NQ50 206 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 AGPAT4Q9NRZ5 378 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 GCNT4Q9P109 453 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ARMCX1Q9P291 453 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 RNF150Q9ULK6 438 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 NCKAP1Q9Y2A7 1128 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 MMP24Q9Y5R2 645 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 PTPRJQ12913 1337 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 PLXNA2O75051 1894 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 DIDO1Q9BTC0 2240 aaKnown RBP3.15□□□□□ -1.9
TOPBP1-208ENST00000511439 ZNF638Q14966 1978 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 BLOC1S5-TXNDC5H3BN57 136 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 B4GALT5O43286 388 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 PCDH7O60245 1069 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CACNG3O60359 315 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 TBCAO75347 108 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 STSP08842 583 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CYP11B2P19099 503 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 EFNA1P20827 205 aaPredicted RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 EEF1B2P24534 225 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 PTAFRP25105 342 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 PTPN3P26045 913 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 RPL9P32969 192 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SPAM1P38567 509 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 LHX1P48742 406 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 VAMP7P51809 220 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 MAPK12P53778 367 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 B3GALT5-AS1P59052 145 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 PTENP60484 403 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 TUBB4BP68371 445 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SMARCB1Q12824 385 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ENPP2Q13822 863 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ZNF273Q14593 569 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CHRNA6Q15825 494 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 UGCGQ16739 394 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 UBE2SQ16763 222 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CA9Q16790 459 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SLC39A12Q504Y0 691 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 PHLDA2Q53GA4 152 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 KRT39Q6A163 491 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 MFSD6Q6ZSS7 791 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ERN2Q76MJ5 926 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 NUP54Q7Z3B4 507 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ISCA2Q86U28 154 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 TMEM139Q8IV31 216 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CCDC83Q8IWF9 413 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 KLHDC8BQ8IXV7 354 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CFAP206Q8IYR0 622 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 DNAJC22Q8N4W6 341 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ZNF611Q8N823 705 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 MAPKAPK5-AS1Q8N8E1 139 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CCDC112Q8NEF3 446 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 OR2T34Q8NGX1 318 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 OR2T3Q8NH03 318 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 KIF18AQ8NI77 898 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SPPL2BQ8TCT7 592 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 NRGNQ92686 78 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SYN2Q92777 582 aaPredicted RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SPSB1Q96BD6 273 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 SPATA17Q96L03 361 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ADPGKQ9BRR6 497 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 FAM129AQ9BZQ8 928 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 RNF41Q9H4P4 317 aaPredicted RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 RBM28Q9NW13 759 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 RCOR3Q9P2K3 495 aaPredicted RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 MAD2L2Q9UI95 211 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 ZDHHC2Q9UIJ5 367 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 CPSF3Q9UKF6 684 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 LIPGQ9Y5X9 500 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 DOCK9Q9BZ29 2069 aa3.15□□□□□ -1.91
TOPBP1-208ENST00000511439 MYH9P35579 1960 aaKnown RBP3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 SCN8AQ9UQD0 1980 aa3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 SVEP1Q4LDE5 3571 aa3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 LOC101059948A0A1B0GTJ6 334 aa3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 TMEM150BA6NC51 233 aa3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 TLCD2A6NGC4 264 aa3.14□□□□□ -1.91
TOPBP1-208ENST00000511439 CCDC188H7C350 402 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms