RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ATOH8Q96SQ7 321 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 TM9SF2Q99805 663 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 RAB17Q9H0T7 212 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 SMYD2Q9NRG4 433 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 PSME2Q9UL46 239 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 CBLCQ9ULV8 474 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 TMCO1Q9UM00 188 aa19.28■□□□□ 0.68
SQSTM1-210ENST00000506042 FOXE1O00358 373 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 DEKP35659 375 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 CPA2P48052 419 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 DIO3P55073 304 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 ACAP2Q15057 778 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 CPSF6Q16630 551 aaKnown RBP eCLIP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 NHSL2Q5HYW2 709 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 VASNQ6EMK4 673 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 ANP32BQ92688 251 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 UCN3Q969E3 161 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 ABTB1Q969K4 478 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 SORBS1Q9BX66 1292 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 DPH5Q9H2P9 285 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 CXorf21Q9HAI6 301 aa19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 TEX10Q9NXF1 929 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-210ENST00000506042 SETD2Q9BYW2 2564 aaPredicted RBP19.27■□□□□ 0.67
SQSTM1-210ENST00000506042 A0A0A6YYD5 115 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 CXorf49A8MYA2 514 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 ARHGEF9O43307 516 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 CLDN9O95484 217 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 RHOXF2BP0C7M4 288 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 FOXD4Q12950 439 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 SNTA1Q13424 505 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 PFKFB4Q16877 469 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 DEFB113Q30KQ7 82 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 KBTBD12Q3ZCT8 623 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 SLC30A6Q6NXT4 461 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 CCDC25Q86WR0 208 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 ISL2Q96A47 359 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 NTNG2Q96CW9 530 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 OR10A5Q9H207 317 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 IPPKQ9H8X2 491 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 NMRK1Q9NWW6 199 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 NDRG3Q9UGV2 375 aa19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 EIF3LQ9Y262 564 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-210ENST00000506042 MBD3L4A6NDZ8 208 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 MBD3L3A6NE82 208 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 MBD3L5A6NJ08 208 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 GLOD5A6NK44 160 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 HRKO00198 91 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 PIAS1O75925 651 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 ACSL3O95573 720 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 AIFM1O95831 613 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 TMIGD3P0DMS9 266 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 NT5EP21589 574 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 FBXW4P57775 412 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 PSPHP78330 225 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 IFT88Q13099 833 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 GAB1Q13480 694 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 GTF2H2Q13888 395 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 MRM1Q6IN84 353 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 GTF2H2CQ6P1K8 395 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 MBD3L2Q8NHZ7 208 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 ZPLD1Q8TCW7 415 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 SFXN3Q9BWM7 321 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 FETUBQ9UGM5 382 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 ADAM29Q9UKF5 820 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 ASB4Q9Y574 426 aa19.25■□□□□ 0.67
SQSTM1-210ENST00000506042 A0A1W2PR48 441 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 LRATO95237 230 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 PORP16435 677 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 CHMP24386 653 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 ADSLP30566 484 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 BSGP35613 385 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 CASP3P42574 277 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 CCNG1P51959 295 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 DCAF7P61962 342 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 FUT7Q11130 342 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 SNTB1Q13884 538 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 PCBP2Q15366 365 aaKnown RBP eCLIP19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 TIGD3Q6B0B8 471 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 DGAT2L6Q6ZPD8 337 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 NUP54Q7Z3B4 507 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 CMC1Q7Z7K0 106 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 VWA5B2Q8N398 1253 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 GNRHR2Q96P88 292 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 PIGMQ9H3S5 423 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 PROK2Q9HC23 129 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 BEX4Q9NWD9 120 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 KLRF1Q9NZS2 232 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 SPG11Q96JI7 2443 aa19.24■□□□□ 0.67
SQSTM1-210ENST00000506042 CLCA1A8K7I4 914 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 H0Y3Z8 333 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 ACOX3O15254 700 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 SSTR4P31391 388 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 PHBP35232 272 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 KRT20P35900 424 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 XKP51811 444 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 ZNF136P52737 540 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 CCNYL2Q5T2Q4 361 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 TMEM81Q6P7N7 255 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 AAGABQ6PD74 315 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 ANGPTL8Q6UXH0 198 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms