RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C7orf61Q8IZ16 206 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 GPR32P1Q8NGA4 272 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 OR4D11Q8NGI4 311 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SETD7Q8WTS6 366 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 OTULINQ96BN8 352 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 AIF1LQ9BQI0 150 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 POLR2J2Q9GZM3 115 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 KLHL31Q9H511 634 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 ANKRA2Q9H9E1 313 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 KCNK12Q9HB15 430 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SMURF1Q9HCE7 757 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 RANGRFQ9HD47 186 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 POFUT2Q9Y2G5 429 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 NUP210Q8TEM1 1887 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 TLX2O43763 284 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 UQCRC2P22695 453 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 RBBP4Q09028 425 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 SYPL1Q16563 259 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 CRB2Q5IJ48 1285 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 METRNLQ641Q3 311 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 PSRC1Q6PGN9 363 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 VITQ6UXI7 678 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 C6orf120Q7Z4R8 191 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 COMTD1Q86VU5 262 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 KIAA1958Q8N8K9 716 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 NLGN4YQ8NFZ3 816 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 OPALINQ96PE5 141 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 TEFMQ96QE5 360 aaKnown RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 INSM2Q96T92 566 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 PHOX2BQ99453 314 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 AICDAQ9GZX7 198 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 SERHL2Q9H4I8 314 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 CCRL2O00421 344 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 KAT7O95251 611 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 IFNW1P05000 195 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 VASPP50552 380 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 GPM6BQ13491 265 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 ZFP69Q49AA0 526 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 AGBL4Q5VU57 503 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 REEP3Q6NUK4 255 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 UBE3DQ7Z6J8 389 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 UBE2E3Q969T4 207 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 HHATLQ9HCP6 504 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 CLN6Q9NWW5 311 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 ENPP4Q9Y6X5 453 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 LAMA1P25391 3075 aa15.63■□□□□ 0.09
CCDC88B-210ENST00000494566 IGKV1-8A0A0C4DH67 115 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 A0A1B0GVC2 190 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 A6NIN4 97 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 C4orf51C9J302 202 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 E9PQ18 207 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 M0R3H8 397 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 NCR1O76036 304 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 C8orf89P0DMQ9 161 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 ANXA8P13928 327 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 CCR8P51685 355 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 SNRPD2P62316 118 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 MLLT1Q03111 559 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 MAP4K2Q12851 820 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 IRF4Q15306 451 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 AGAP6Q5VW22 663 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 DGLUCYQ7Z3D6 616 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 HDDC3Q8N4P3 179 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 GANCQ8TET4 914 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 ARSGQ96EG1 525 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 AGAP4Q96P64 663 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 TM9SF2Q99805 663 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 KXD1Q9BQD3 176 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 SIRT3Q9NTG7 399 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 PEX16Q9Y5Y5 336 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 PRAMEF27A3QJZ7 478 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 SAGE2PA6NJ88 616 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 ANHXE9PGG2 379 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 FRS3O43559 492 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 CH25HO95992 272 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 OR12D1P0DN82 309 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 GABRB1P18505 474 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 RPL3P39023 403 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 TARDBPQ13148 414 aaKnown RBP eCLIP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 HNRNPA0Q13151 305 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 FRMPD2BQ6IN97 320 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 ZNF517Q6ZMY9 492 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 ATCAYQ86WG3 371 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 XAGE5Q8WWM1 108 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 DEPDC7Q96QD5 511 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 OR2A14Q96R47 310 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 TMEM246Q9BRR3 403 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 QRSL1Q9H0R6 528 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 THSD1Q9NS62 852 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 HCN4Q9Y3Q4 1203 aa15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 MDC1Q14676 2089 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-210ENST00000494566 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CAPN5O15484 640 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 NDUFS4O43181 175 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CSO75390 466 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ERAL1O75616 437 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CRISP1P54107 249 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ZNF45Q02386 682 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CDC20Q12834 499 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 PDGFRLQ15198 375 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms