RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 EPHA2P29317 976 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 PPP2R1BP30154 601 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ACTR1BP42025 376 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 OR1E2P47887 323 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 CRISP3P54108 245 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 CDH12P55289 794 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ACTR1AP61163 376 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 SPIBQ01892 262 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ALDH6A1Q02252 535 aaKnown RBP10.12□□□□□ -0.79
USP4-214ENST00000491791 CSTF1Q05048 431 aaKnown RBP10.12□□□□□ -0.79
USP4-214ENST00000491791 ILF3Q12906 894 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP4-214ENST00000491791 ILKQ13418 452 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 DGCR6Q14129 220 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 LAPTM4AQ15012 233 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 UBE2UQ5VVX9 321 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 GPR107Q5VW38 600 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 KIAA0895LQ68EN5 471 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 LAIR1Q6GTX8 287 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 KIAA1324Q6UXG2 1013 aaKnown RBP10.12□□□□□ -0.79
USP4-214ENST00000491791 USP53Q70EK8 1073 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 RNF44Q7L0R7 432 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ENTHD1Q8IYW4 607 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 BPIFB6Q8NFQ5 453 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 OR8K5Q8NH50 307 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 CNIH3Q8TBE1 160 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 UTP15Q8TED0 518 aaKnown RBP10.12□□□□□ -0.79
USP4-214ENST00000491791 FCGR1BQ92637 280 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 PROX1Q92786 737 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 TSACCQ96A04 125 aaPredicted RBP10.12□□□□□ -0.79
USP4-214ENST00000491791 ELP4Q96EB1 424 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ALPK1Q96QP1 1244 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 PINK1Q9BXM7 581 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 OR51I1Q9H343 314 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ZNF556Q9HAH1 456 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 C3orf14Q9HBI5 128 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 LYRM4Q9HD34 91 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 GIMAP4Q9NUV9 329 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 PSORS1C1Q9UIG5 152 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ENPP5Q9UJA9 477 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 ENTPD4Q9Y227 616 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 RNF6Q9Y252 685 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 CACNA1IQ9P0X4 2223 aa10.12□□□□□ -0.79
USP4-214ENST00000491791 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SPTY2D1-AS1A0A0U1RR47 76 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TCRBV21S2A2A0A5A6 115 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 DUXAA6NLW8 204 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 ZAR1LA6NP61 321 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 H0Y8X5 98 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 PCDH17O14917 1159 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 PGRMC2O15173 223 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 ZSCAN9O15535 394 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 RGS10O43665 173 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SEMA7AO75326 666 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 GABARAPO95166 117 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 RASGRP1O95267 797 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 LGI1O95970 557 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 AGR2O95994 175 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 GUSBP08236 651 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SLC35G6P0C7Q6 338 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 NR2F6P10588 404 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 UGT2B7P16662 529 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 CCNA2P20248 432 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 ZNF10P21506 573 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 NCBP2P52298 156 aaKnown RBP eCLIP10.11□□□□□ -0.79
USP4-214ENST00000491791 CASP9P55211 416 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 GP2P55259 537 aaKnown RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 LIM2P55344 173 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 PRR5P85299 388 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TNFRSF17Q02223 184 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 COX10Q12887 443 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TP53BP2Q13625 1128 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SUZ12Q15022 739 aaKnown RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 NEDD8Q15843 81 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SLC25A30Q5SVS4 291 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 FCRL6Q6DN72 434 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 FRMPD2BQ6IN97 320 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 HEPHL1Q6MZM0 1159 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TNFAIP8L2Q6P589 184 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 FIGLAQ6QHK4 219 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SLC16A12Q6ZSM3 486 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 Q6ZSR6 202 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SYT13Q7L8C5 426 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 CROCCP3Q8IVE0 287 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 DNAJC22Q8N4W6 341 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 CAMKVQ8NCB2 501 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 BAHD1Q8TBE0 780 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 TRUB1Q8WWH5 349 aaKnown RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 GAB3Q8WWW8 586 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 KLHL6Q8WZ60 621 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 FAM3CQ92520 227 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SGCDQ92629 289 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 PMM1Q92871 262 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 RAB8BQ92930 207 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 UCN3Q969E3 161 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 YIPF6Q96EC8 236 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 GIMAP5Q96F15 307 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TRNT1Q96Q11 434 aaKnown RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 ORAI3Q9BRQ5 295 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 TMEM121BQ9BXQ6 578 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 GSDMCQ9BYG8 508 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms