RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TRMT12Q53H54 448 aaKnown RBP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 OPN5Q6U736 354 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 Q6ZSR9 355 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CCDC116Q8IYX3 515 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 OR10G3Q8NGC4 313 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 OR52N2Q8NGI0 321 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CDC26Q8NHZ8 85 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 RELTQ969Z4 430 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ADIPOR1Q96A54 375 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ZIM3Q96PE6 472 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 SMC6Q96SB8 1091 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 FAIM2Q9BWQ8 316 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 PROK2Q9HC23 129 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.72■□□□□ 0.275e-9■■■□□ 14.9
COL9A3-214ENST00000490398 PLEKHB1Q9UF11 243 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 MID2Q9UJV3 735 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 TINAGQ9UJW2 476 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ICE1Q9Y2F5 2266 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CROCCQ5TZA2 2017 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 C2orf92A0A1B0GVN3 265 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 CCDC151A5D8V7 595 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 OR6C76A6NM76 312 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 KLRC4-KLRK1H3BQV0 150 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 SLC19A2O60779 497 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 FBXO45P0C2W1 286 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 GPX3P22352 226 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 TACR1P25103 407 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 NAA20P61599 178 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 MAP4K2Q12851 820 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 IMPG1Q17R60 797 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 ARL13AQ5H913 290 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-214ENST00000490398 PRAMEF20Q5VT98 475 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 KANK2Q63ZY3 851 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 DESI1Q6ICB0 168 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 NCCRP1Q6ZVX7 275 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-214ENST00000490398 EXOC3L1Q86VI1 746 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 PRR22Q8IZ63 422 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 VWA5B2Q8N398 1253 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 POGLUT1Q8NBL1 392 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 OR5M3Q8NGP4 307 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 OR6Y1Q8NGX8 325 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 SLC22A8Q8TCC7 542 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 CTHRC1Q96CG8 243 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 SPACA9Q96E40 222 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-214ENST00000490398 PKNOX2Q96KN3 472 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 EGLN2Q96KS0 407 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 DEFB127Q9H1M4 99 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 TUBA8Q9NY65 449 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-214ENST00000490398 GIMAP2Q9UG22 337 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 ZNF835Q9Y2P0 537 aa16.71■□□□□ 0.27
COL9A3-214ENST00000490398 SPTBN1Q01082 2364 aaKnown RBP16.71■□□□□ 0.26
COL9A3-214ENST00000490398 GOLGA6L10A6NI86 522 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 TFECO14948 347 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 RSL1D1O76021 490 aaKnown RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 PDE9AO76083 593 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 GLSO94925 669 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 BPGMP07738 259 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 LINC00032P0C843 101 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 GP1BBP13224 206 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 DRD2P14416 443 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 CNR1P21554 472 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 CA7P43166 264 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 C2orf80Q0P641 193 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 FOXO1Q12778 655 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 MPP2Q14168 576 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 NNATQ16517 81 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 UGT3A2Q3SY77 523 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 KRTCAP3Q53RY4 240 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 ZNF628Q5EBL2 1059 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 FAM71E1Q6IPT2 247 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 NOXRED1Q6NXP6 359 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 LRRC25Q8N386 305 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 GOLM1Q8NBJ4 401 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 OR9A2Q8NGT5 310 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 KAT2AQ92830 837 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 SGCZQ96LD1 299 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 ITPAQ9BY32 194 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 TTTY12Q9BZ98 90 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 NXF5Q9H1B4 397 aaKnown RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 ZNF395Q9H8N7 513 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-214ENST00000490398 BCAP29Q9UHQ4 241 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 PSME2Q9UL46 239 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 DNAJC15Q9Y5T4 150 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 LIPGQ9Y5X9 500 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 ZNF780BQ9Y6R6 833 aa16.7■□□□□ 0.26
COL9A3-214ENST00000490398 A0A1B0GTH9 108 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 H3BQF6 201 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 RGS16O15492 202 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-214ENST00000490398 NPHS1O60500 1241 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 CELA3AP09093 270 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 FBXW4P57775 412 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 PPIAP62937 165 aaKnown RBP16.69■□□□□ 0.26
COL9A3-214ENST00000490398 ZNF763Q0D2J5 394 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 TNFAIP8L3Q5GJ75 292 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 CEP85LQ5SZL2 805 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 BICRALQ6AI39 1079 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 FAM47EQ6ZV65 393 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 TICAM1Q8IUC6 712 aa16.69■□□□□ 0.26
COL9A3-214ENST00000490398 SPPL2CQ8IUH8 684 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms