RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 LCA5Q86VQ0 697 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 CCDC71Q8IV32 467 aaPredicted RBP14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TAGAPQ8N103 731 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 OR5M3Q8NGP4 307 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 SELENOMQ8WWX9 145 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 SARAFQ96BY9 339 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 NTNG2Q96CW9 530 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 MTBPQ96DY7 904 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TMEM237Q96Q45 408 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TTYH2Q9BSA4 534 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TXLNGYQ9BZA5 131 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 OR10A5Q9H207 317 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 ACKR4Q9NPB9 350 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TMEM216Q9P0N5 145 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TNFRSF10DQ9UBN6 386 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 SNX6Q9UNH7 406 aa14.98□□□□□ -0.01
COL9A3-208ENST00000469802 TRGV5A0A0B4J1U4 118 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 FAM90A27PA6NNH2 459 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 RIPK2O43353 540 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 WDR1O75083 606 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 OR4F21O95013 312 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 LRATO95237 230 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 GLI4P10075 376 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 PORP16435 677 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-208ENST00000469802 GPX3P22352 226 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 MSX1P28360 303 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 SOX18P35713 384 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 HSD17B3P37058 310 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 CLCQ05315 142 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 MGAT2Q10469 447 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 PRICKLE4Q2TBC4 344 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 UNC50Q53HI1 259 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 TCHHL1Q5QJ38 904 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-208ENST00000469802 TBCELQ5QJ74 424 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 ZNF678Q5SXM1 525 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 LGSNQ5TDP6 509 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 TMEM64Q6YI46 380 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 B3GNT6Q6ZMB0 384 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 MEX3BQ6ZN04 569 aaKnown RBP14.97□□□□□ -0.01
COL9A3-208ENST00000469802 MMP21Q8N119 569 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 OR7G1Q8NGA0 311 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 TM4SF18Q96CE8 201 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 ZNF382Q96SR6 550 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 SECISBP2Q96T21 854 aaKnown RBP14.97□□□□□ -0.01
COL9A3-208ENST00000469802 HBEGFQ99075 208 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 DOHHQ9BU89 302 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 EPB41L4BQ9H329 900 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 MAT2BQ9NZL9 334 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 FETUBQ9UGM5 382 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 ZNF639Q9UID6 485 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 DTX4Q9Y2E6 619 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 PCDHGB3Q9Y5G1 929 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 NPFFR2Q9Y5X5 522 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 CCDC168Q8NDH2 2452 aa14.97□□□□□ -0.01
COL9A3-208ENST00000469802 KIAA1549Q9HCM3 1950 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 CELSR1Q9NYQ6 3014 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 NKX2-6A6NCS4 301 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 TP53I11O14683 189 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 DLX3O60479 287 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 GUCY1B2O75343 617 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 HSD3B1P14060 373 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 HSD3B2P26439 372 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 TMED10P49755 219 aaKnown RBP14.96□□□□□ -0.01
COL9A3-208ENST00000469802 FBXW4P57775 412 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 KRTAP10-9P60411 292 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 DUSP8Q13202 625 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 RASA2Q15283 850 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 FNDC7Q5VTL7 733 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 BICRALQ6AI39 1079 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 ZNF585AQ6P3V2 769 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 VWA5B2Q8N398 1253 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 C1orf52Q8N6N3 182 aaKnown RBP14.96□□□□□ -0.01
COL9A3-208ENST00000469802 SPPL2AQ8TCT8 520 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 MZB1Q8WU39 189 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 CTHRC1Q96CG8 243 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 ZNF597Q96LX8 424 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 TEP1Q99973 2627 aaKnown RBP14.96□□□□□ -0.01
COL9A3-208ENST00000469802 UCK2Q9BZX2 261 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 SLC6A15Q9H2J7 730 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 UBQLN3Q9H347 655 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 LDAHQ9H6V9 325 aa14.96□□□□□ -0.01
COL9A3-208ENST00000469802 A0A0G2JNJ9 132 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 GOLGA6L10A6NI86 522 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 CAPN14A8MX76 684 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 MANBAO00462 879 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 TAC1P20366 129 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 NT5EP21589 574 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 ADH7P40394 386 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 TRA2BP62995 288 aaKnown RBP14.95□□□□□ -0.02
COL9A3-208ENST00000469802 DUSP2Q05923 314 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 MAP4K2Q12851 820 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 CSTF3Q12996 717 aaKnown RBP14.95□□□□□ -0.02
COL9A3-208ENST00000469802 C1orf185Q5T7R7 199 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 WLSQ5T9L3 541 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 HLA-DQA1Q5Y7H0 255 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 IFT20Q8IY31 132 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 CEP112Q8N8E3 955 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 CDYL2Q8N8U2 506 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 KIF18AQ8NI77 898 aa14.95□□□□□ -0.02
COL9A3-208ENST00000469802 NEIL3Q8TAT5 605 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms