RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ACSL3O95573 720 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 KLK1P06870 262 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 TACR1P25103 407 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 PHBP35232 272 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 ARFIP1P53367 373 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 CRYZQ08257 329 aaKnown RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 IFT88Q13099 833 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 C8orf74Q6P047 294 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 SEM1Q6ZVN7 128 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 C17orf53Q8N3J3 647 aaPredicted RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 NAXEQ8NCW5 288 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 OR4K14Q8NGD5 310 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 GOT1L1Q8NHS2 421 aaPredicted RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 SPPL2AQ8TCT8 520 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 HSPBAP1Q96EW2 488 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 TRIB1Q96RU8 372 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 MRPL1Q9BYD6 325 aaKnown RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 OR10A5Q9H207 317 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 CXorf21Q9HAI6 301 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 XPR1Q9UBH6 696 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 PLEKHA6Q9Y2H5 1048 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 TSC22D4Q9Y3Q8 395 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 NPFFR2Q9Y5X5 522 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 ABCA4P78363 2273 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 OR7A17O14581 309 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 TRIM3O75382 744 aaPredicted RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 ERAL1O75616 437 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 CTAG2O75638 210 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 SEMA3DO95025 777 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 IL2RAP01589 272 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 CDK9P50750 372 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 AGFG1P52594 562 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 PPP2R2AP63151 447 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 FLYWCH1Q4VC44 716 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 EIPR1Q53HC9 387 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 CCNYL2Q5T2Q4 361 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 SYT10Q6XYQ8 523 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 PACS2Q86VP3 889 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 LACC1Q8IV20 430 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 PM20D2Q8IYS1 436 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 PLD6Q8N2A8 252 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 ZNF441Q8N8Z8 693 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 L3MBTL4Q8NA19 623 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 NSUN5Q96P11 429 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 GNRHR2Q96P88 292 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 LIME1Q9H400 295 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 PFDN4Q9NQP4 134 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 ZNF358Q9NW07 568 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 MTRF1LQ9UGC7 380 aaKnown RBP13.29□□□□□ -0.28
SDC1-204ENST00000429035 BCAP29Q9UHQ4 241 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 SLC12A4Q9UP95 1085 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 C15orf41Q9Y2V0 281 aa13.29□□□□□ -0.28
SDC1-204ENST00000429035 HMX2A2RU54 273 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 AHRRA9YTQ3 701 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 FOXE1O00358 373 aaPredicted RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 SMIM24O75264 130 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 KRT38O76015 456 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 SNX4O95219 450 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 ALDOAP04075 364 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 INHBAP08476 426 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 CD99P14209 185 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 CPMP14384 443 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 GALNSP34059 522 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 DEKP35659 375 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 ALDH9A1P49189 494 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 XKP51811 444 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 MAPK12P53778 367 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 PLCXD2Q0VAA5 305 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 WIPI1Q5MNZ9 446 aaPredicted RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 DCST1Q5T197 706 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 UBAP2Q5T6F2 1119 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 FRG2Q64ET8 278 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 ANGPTL8Q6UXH0 198 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 RPS27LQ71UM5 84 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 PAGE2Q7Z2X7 111 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 VWA5B2Q8N398 1253 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 CHDHQ8NE62 594 aaPredicted RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 NINJ1Q92982 152 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 RNASE6Q93091 150 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 TP53INP1Q96A56 240 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 FRG2BQ96QU4 278 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 SH3GL2Q99962 352 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 OSBPL11Q9BXB4 747 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 ITPAQ9BY32 194 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 NXF5Q9H1B4 397 aaKnown RBP13.28□□□□□ -0.28
SDC1-204ENST00000429035 ELOVL6Q9H5J4 265 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 AHSPQ9NZD4 102 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 NINJ2Q9NZG7 142 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 EHD3Q9NZN3 535 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 KLRF1Q9NZS2 232 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 ST6GALNAC2Q9UJ37 374 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 DTX4Q9Y2E6 619 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 PCDHGB3Q9Y5G1 929 aa13.28□□□□□ -0.28
SDC1-204ENST00000429035 MTORP42345 2549 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 CCDC189A1A4V9 331 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 GOLGA6L10A6NI86 522 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 A6NNC1 897 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 EPPINO95925 133 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 TSPAN8P19075 237 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 GPX3P22352 226 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 206.4 ms