RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PCTPQ9UKL6 214 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 OR6C76A6NM76 312 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 UGDHO60701 494 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 GABRA1P14867 456 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 S1PR1P21453 382 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 FEN1P39748 380 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 MASP1P48740 699 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 ETF1P62495 437 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 CRYZQ08257 329 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 TRAF3Q13114 568 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 BIKQ13323 160 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 RPS6KA2Q15349 733 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 LTB4RQ15722 352 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 SLC25A35Q3KQZ1 300 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 ACSF3Q4G176 576 aaPredicted RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 CCNYL2Q5T2Q4 361 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 C8orf74Q6P047 294 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 ADCY4Q8NFM4 1077 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 OR4F6Q8NGB9 312 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 OR4K14Q8NGD5 310 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 ANP32BQ92688 251 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 ADIPOR1Q96A54 375 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 SERPINI1Q99574 410 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 POLDIP3Q9BY77 421 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 BRINP2Q9C0B6 783 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 NXF5Q9H1B4 397 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 EPB41L4BQ9H329 900 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 ACKR4Q9NPB9 350 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 B4GALT7Q9UBV7 327 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 CAMK2AQ9UQM7 478 aa10.59□□□□□ -0.71
USP4-204ENST00000416417 TNPO3Q9Y5L0 923 aaKnown RBP10.59□□□□□ -0.71
USP4-204ENST00000416417 TP53I11O14683 189 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ERAL1O75616 437 aaKnown RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 CTAG2O75638 210 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CPMP14384 443 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 GPX3P22352 226 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 SOX18P35713 384 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CASP3P42574 277 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 KIR2DL3P43628 341 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ARFIP1P53367 373 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CDH13P55290 713 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 FUT7Q11130 342 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 TCHHL1Q5QJ38 904 aaPredicted RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 FRG2Q64ET8 278 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 COMMD6Q7Z4G1 85 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 MILR1Q7Z6M3 343 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 YRDCQ86U90 279 aaKnown RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 FRG2BQ96QU4 278 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 TRIB1Q96RU8 372 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 NODALQ96S42 347 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ITPAQ9BY32 194 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ANGPTL4Q9BY76 406 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ACSS3Q9H6R3 686 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ANKRA2Q9H9E1 313 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 GALNT9Q9HCQ5 603 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 BCAP29Q9UHQ4 241 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 SLC12A4Q9UP95 1085 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 NF1P21359 2839 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 KIAA1549Q9HCM3 1950 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 HSPB2A8KAH6 182 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 POC1B-GALNT4F8VUJ3 575 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 SEMA3DO95025 777 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PDYNP01213 254 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PORP16435 677 aaPredicted RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 BMP7P18075 431 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CNTFP26441 200 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ABCD3P28288 659 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 GALNSP34059 522 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CDK9P50750 372 aaKnown RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 ZNF136P52737 540 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 MAPK12P53778 367 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 MGAT2Q10469 447 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 IFT88Q13099 833 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CEBPEQ15744 281 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 HSPB2Q16082 182 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 LETMD1Q6P1Q0 360 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 POMZP3Q6PJE2 187 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ANGPTL8Q6UXH0 198 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 ZNF572Q7Z3I7 529 aaPredicted RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 DND1Q8IYX4 353 aaKnown RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 METTL4Q8N3J2 472 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 C7orf57Q8NEG2 295 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 RDH11Q8TC12 318 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 SLC44A1Q8WWI5 657 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 TP53INP1Q96A56 240 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PAFAH2Q99487 392 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 SH3GL2Q99962 352 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 NTMT1Q9BV86 223 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 UGT2B28Q9BY64 529 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 UBQLN3Q9H347 655 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CDC42EP4Q9H3Q1 356 aaKnown RBP10.58□□□□□ -0.72
USP4-204ENST00000416417 METTL7AQ9H8H3 244 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 QPCTLQ9NXS2 382 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PSD3Q9NYI0 1048 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 CES1P1Q9UKY3 287 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PLEKHA6Q9Y2H5 1048 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 C15orf41Q9Y2V0 281 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 PCDHA9Q9Y5H5 950 aa10.58□□□□□ -0.72
USP4-204ENST00000416417 NINQ8N4C6 2090 aa10.57□□□□□ -0.72
USP4-204ENST00000416417 ANKRD33BA6NCL7 494 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms