RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CNOT11Q9UKZ1 510 aaKnown RBP17.56■□□□□ 0.4
SF3A1-202ENST00000411423 MEMO1Q9Y316 297 aa17.56■□□□□ 0.4
SF3A1-202ENST00000411423 CCL27Q9Y4X3 112 aa17.56■□□□□ 0.4
SF3A1-202ENST00000411423 CHCHD2Q9Y6H1 151 aaPredicted RBP17.56■□□□□ 0.4
SF3A1-202ENST00000411423 NCOA6Q14686 2063 aaPredicted RBP17.56■□□□□ 0.4
SF3A1-202ENST00000411423 CELSR2Q9HCU4 2923 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 C2orf92A0A1B0GVN3 265 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 NME6O75414 186 aaPredicted RBP17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CBX7O95931 251 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 ATP1B1P05026 303 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 ABOP16442 354 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 GPX3P22352 226 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 TIA1P31483 386 aaKnown RBP eCLIP17.55■□□□□ 0.4
SF3A1-202ENST00000411423 MAGEA5P43359 124 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 PLGLB1Q02325 96 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 MAP4K2Q12851 820 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 TRMT12Q53H54 448 aaKnown RBP17.55■□□□□ 0.4
SF3A1-202ENST00000411423 LIPMQ5VYY2 423 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CLEC6AQ6EIG7 209 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 DESI1Q6ICB0 168 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 WDR93Q6P2C0 686 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 GALNT18Q6P9A2 607 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 BNC2Q6ZN30 1099 aaPredicted RBP17.55■□□□□ 0.4
SF3A1-202ENST00000411423 FAM47EQ6ZV65 393 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CNPY4Q8N129 248 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 SLC15A4Q8N697 577 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CCDC63Q8NA47 563 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 OR5M3Q8NGP4 307 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CAVIN3Q969G5 261 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 CTHRC1Q96CG8 243 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 BRINP2Q9C0B6 783 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.55■□□□□ 0.4
SF3A1-202ENST00000411423 MKS1Q9NXB0 559 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 LGALS13Q9UHV8 139 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 PLLPQ9Y342 182 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 NCKAP5O14513 1909 aa17.55■□□□□ 0.4
SF3A1-202ENST00000411423 LRRC3CA6NJW4 275 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 GUCY1B2O75343 617 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 P04436 131 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 RFPL3SP0C7P2 107 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 PCSK2P16519 638 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 DEKP35659 375 aaKnown RBP17.54■□□□□ 0.4
SF3A1-202ENST00000411423 FBXW4P57775 412 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 MRPS35P82673 323 aaKnown RBP17.54■□□□□ 0.4
SF3A1-202ENST00000411423 ACSM2AQ08AH3 577 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 NNATQ16517 81 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 NTRK2Q16620 822 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 ERCC6LQ2NKX8 1250 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 SPIN4Q56A73 249 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 SLC22A10Q63ZE4 541 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 ACSM2BQ68CK6 577 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 BICRALQ6AI39 1079 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 MRGPRGQ86SM5 289 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 PRR22Q8IZ63 422 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 VWA5B2Q8N398 1253 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 RPRMLQ8N4K4 120 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 MARVELD2Q8N4S9 558 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 APOPT1Q96IL0 206 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 DMRTA2Q96SC8 542 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 MECRQ9BV79 373 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 ITPAQ9BY32 194 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 NXF5Q9H1B4 397 aaKnown RBP17.54■□□□□ 0.4
SF3A1-202ENST00000411423 IL1RL2Q9HB29 575 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 SIRT5Q9NXA8 310 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 UTS2RQ9UKP6 389 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 EXO1Q9UQ84 846 aaKnown RBP17.54■□□□□ 0.4
SF3A1-202ENST00000411423 GTF3C1Q12789 2109 aa17.54■□□□□ 0.4
SF3A1-202ENST00000411423 MAST4O15021 2626 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 UNC79Q9P2D8 2635 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 GOLGA6L10A6NI86 522 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 SPAG7O75391 227 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 CSNK2A2P19784 350 aaPredicted RBP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 ALDH3A1P30838 453 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 PTGS2P35354 604 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 HYAL4Q2M3T9 481 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 ZNF628Q5EBL2 1059 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 EMC4Q5J8M3 183 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 GK5Q6ZS86 529 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 TRIM46Q7Z4K8 759 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 CD163Q86VB7 1156 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 SRRM1Q8IYB3 904 aaKnown RBP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 FBXW8Q8N3Y1 598 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 FAM13CQ8NE31 585 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 OR7G1Q8NGA0 311 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 FAM57AQ8TBR7 257 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 TP53INP1Q96A56 240 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 EXOSC8Q96B26 276 aaKnown RBP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 FAIM2Q9BWQ8 316 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 TUBB1Q9H4B7 451 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 TNFRSF10DQ9UBN6 386 aa17.53■□□□□ 0.4
SF3A1-202ENST00000411423 SUCOQ9UBS9 1254 aaKnown RBP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 POLR3HQ9Y535 204 aaPredicted RBP17.53■□□□□ 0.4
SF3A1-202ENST00000411423 EXPH5Q8NEV8 1989 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 GNG14A0A1W2PPG7 69 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 CHRNGP07510 517 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 ARRB2P32121 409 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 CASP6P55212 293 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 KIAA0040Q15053 153 aa17.52■□□□□ 0.4
SF3A1-202ENST00000411423 CFAP157Q5JU67 520 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms