RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ARFIP1P53367 373 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 GMFBP60983 142 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 SELENOWP63302 87 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 KEAP1Q14145 624 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 SYT6Q5T7P8 510 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 OR2G6Q5TZ20 316 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 PAQR6Q6TCH4 344 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 ZFP82Q8N141 532 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 C2CD4CQ8TF44 421 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF300Q96RE9 604 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 QRSL1Q9H0R6 528 aaKnown RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 REEP4Q9H6H4 257 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 PDFQ9HBH1 243 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 KLHL28Q9NXS3 571 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 GRIP1Q9Y3R0 1128 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 PCDHGA6Q9Y5G7 932 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 SOBPA7XYQ1 873 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 SCAMP2O15127 329 aaKnown RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 GRM6O15303 877 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 TIA1P31483 386 aaKnown RBP eCLIP11.36□□□□□ -0.595e-7■□□□□ 8.1
HMGB1-206ENST00000405805 GGT2P36268 569 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 EIF2DP41214 584 aaKnown RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 TBPL1P62380 186 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 ZMAT1Q5H9K5 638 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 KDM4DQ6B0I6 523 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 MZT2AQ6P582 158 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 TMIGD1Q6UXZ0 262 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 DNAJC22Q8N4W6 341 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 FAM46DQ8NEK8 389 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 CA5BP1Q8WTZ4 195 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 IGSF21Q96ID5 467 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 CASD1Q96PB1 797 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 TEFMQ96QE5 360 aaKnown RBP11.36□□□□□ -0.59
HMGB1-206ENST00000405805 PSD2Q9BQI7 771 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 SLC12A9Q9BXP2 914 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 DUSP21Q9H596 190 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 AKIP1Q9NQ31 210 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 CACNA1IQ9P0X4 2223 aa11.36□□□□□ -0.59
HMGB1-206ENST00000405805 ARHGAP33O14559 1287 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 MMP20O60882 483 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 POP7O75817 140 aaKnown RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 C8AP07357 584 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 ALAS2P22557 587 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 S100A2P29034 98 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 MTFR2Q6P444 385 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 XKRXQ6PP77 449 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 GDPD3Q7L5L3 318 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 WDR53Q7Z5U6 358 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 LSRQ86X29 649 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 C10orf53Q8N6V4 93 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 OR5J2Q8NH18 312 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 DNAJA4Q8WW22 397 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 AP3S1Q92572 193 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 HYLS1Q96M11 299 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SLC38A2Q96QD8 506 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SEC14L4Q9UDX3 406 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 MBD1Q9UIS9 605 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 FBXO10Q9UK96 956 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 GMEB2Q9UKD1 530 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 TMPRSS11EQ9UL52 423 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PRG2P13727 222 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 STOMP27105 288 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SDC2P34741 201 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 CBX5P45973 191 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 MAP2K3P46734 347 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SPINT3P49223 89 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 FBXO43Q4G163 708 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 LY6G5CQ5SRR4 150 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PLPP4Q5VZY2 271 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PLCZ1Q86YW0 608 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 OR5D16Q8NGK9 328 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 DPF3Q92784 378 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 USP7Q93009 1102 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 KCTD7Q96MP8 289 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PIP5K1AQ99755 562 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 ENTPD4Q9Y227 616 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 RPL36Q9Y3U8 105 aaKnown RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 C2orf92A0A1B0GVN3 265 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 OIP5O43482 229 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 GASTP01350 101 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SDHBP21912 280 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 TOMM20Q15388 145 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 LRRC26Q2I0M4 334 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 FTMTQ8N4E7 242 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF557Q8N988 423 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 DOK1Q99704 481 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SPOCK3Q9BQ16 436 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 P2RY12Q9H244 342 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 MARCH5Q9NX47 278 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 STOX2Q9P2F5 926 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PADI2Q9Y2J8 665 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 OR2A25A4D2G3 310 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 CD8B2A6NJW9 211 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 CD8BP10966 210 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 ITGAMP11215 1152 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SRCP12931 536 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 CR2P20023 1033 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 DGKGP49619 791 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 PNCKQ6P2M8 343 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 HSD11B1LQ7Z5J1 315 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms