RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 HIC2Q96JB3 615 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 GCNAQ96QF7 691 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZNF300Q96RE9 604 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 CIB1Q99828 191 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CCM2Q9BSQ5 444 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 MUC13Q9H3R2 512 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZDHHC6Q9H6R6 413 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CXorf36Q9H7Y0 433 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 EFCAB1Q9HAE3 211 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 MYNNQ9NPC7 610 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 THSD1Q9NS62 852 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ACER3Q9NUN7 267 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ANKRD10Q9NXR5 420 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 QPCTLQ9NXS2 382 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TMEM184BQ9Y519 407 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 KCNE3Q9Y6H6 103 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RP1L1Q8IWN7 2480 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 SPAG17Q6Q759 2223 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 GVINP1Q7Z2Y8 2422 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PIPSLA2A3N6 862 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ARRDC5A6NEK1 342 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SYCE1LA8MT33 242 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 H0YAE9 185 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 M0R3H8 397 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RECQL5O94762 991 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 IFI6P09912 130 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CDK4P11802 303 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ITGB6P18564 788 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NCF2P19878 526 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 RYKP34925 604 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TNFRSF4P43489 277 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RASSF2P50749 326 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 KPNA2P52292 529 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 CHN2P52757 468 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SLC16A1P53985 500 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 POLE2P56282 527 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 AP1S2P56377 157 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NME5P56597 212 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SNRPD1P62314 119 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 CSNK1G2P78368 415 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PRAMEP78395 509 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 IGLV3-21P80748 117 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 TCF15Q12870 199 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NR1D2Q14995 579 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RGNQ15493 299 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZNF124Q15973 351 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 AP5B1Q2VPB7 878 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TMEM95Q3KNT9 176 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FAM174BQ3ZCQ3 159 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 KCTD21Q4G0X4 260 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TIGD2Q4W5G0 525 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TMTC4Q5T4D3 741 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 THEMIS2Q5TEJ8 643 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FNDC7Q5VTL7 733 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 KIAA1614Q5VZ46 1190 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZDHHC20Q5W0Z9 365 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ANKRD26P1Q6NSI1 321 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SHQ1Q6PI26 577 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 KLHL17Q6TDP4 642 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 B3GNT6Q6ZMB0 384 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ABI3BPQ7Z7G0 1075 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 AMIGO2Q86SJ2 522 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PAQR7Q86WK9 346 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PLXDC1Q8IUK5 500 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ENTHD1Q8IYW4 607 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 GALNT15Q8N3T1 639 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SLC15A4Q8N697 577 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FRMD1Q8N878 549 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 DDI1Q8WTU0 396 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FAR1Q8WVX9 515 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SLC13A3Q8WWT9 602 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 MUL1Q969V5 352 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 EME1Q96AY2 570 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ULK4Q96C45 1275 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TRMT61AQ96FX7 289 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 PDXPQ96GD0 296 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 OR2A14Q96R47 310 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NDC1Q9BTX1 674 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 WRAP53Q9BUR4 548 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZNF426Q9BUY5 554 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 BBS2Q9BXC9 721 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CLPBQ9H078 707 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SEMA6AQ9H2E6 1030 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SFXN1Q9H9B4 322 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 EML4Q9HC35 981 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 SEPSECSQ9HD40 501 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 BATF3Q9NR55 127 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TBC1D23Q9NUY8 699 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FAM118AQ9NWS6 357 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SPHK1Q9NYA1 384 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NCDNQ9UBB6 729 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 APOBEC3BQ9UH17 382 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 TLK1Q9UKI8 766 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 A4GNTQ9UNA3 340 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 MRPS17Q9Y2R5 130 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 TMED5Q9Y3A6 229 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RHBDD3Q9Y3P4 386 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PKP3Q9Y446 797 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 AP4S1Q9Y587 144 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 LYVE1Q9Y5Y7 322 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms