RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PIGGQ5H8A4 983 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CES4AQ5XG92 561 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 LKAAEAR1Q8TD35 194 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 S100A13Q99584 98 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ALOXE3Q9BYJ1 711 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 DUSP22Q9NRW4 184 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KCND3Q9UK17 655 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 A0A0A6YYC8 382 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 I3L1I5 382 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 FLRT2O43155 660 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GALR3O60755 368 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 HEXBP07686 556 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 FOXA1P55317 472 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 MC1RQ01726 317 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 COLEC12Q5KU26 742 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RNF44Q7L0R7 432 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CARM1Q86X55 608 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SLC5A8Q8N695 610 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF300Q96RE9 604 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KCNN2Q9H2S1 579 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 COQ10BQ9H8M1 238 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GORASP2Q9H8Y8 452 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 FARSBQ9NSD9 589 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RSL24D1Q9UHA3 163 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GTF2A1LQ9UNN4 478 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ZFR2Q9UPR6 939 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TRAPPC13A5PLN9 417 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 IL33O95760 270 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CPMP14384 443 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GPR3P46089 330 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CCINQ13939 588 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DEFB133Q30KQ1 61 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KIAA1614Q5VZ46 1190 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 LPCAT4Q643R3 524 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DTWD1Q8N5C7 304 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 OR52P1PQ8NH57 321 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RAB2BQ8WUD1 216 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TRUB1Q8WWH5 349 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SEMA6CQ9H3T2 930 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DDX31Q9H8H2 851 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CXorf21Q9HAI6 301 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 A8MU76 341 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SDC3O75056 442 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ARL6IP5O75915 188 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KRT33AO76009 404 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GGT1P19440 569 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 FASLGP48023 281 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KCNAB2Q13303 367 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ABI3BPQ7Z7G0 1075 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SLC34A3Q8N130 599 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 HMGCLL1Q8TB92 370 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DEPDC7Q96QD5 511 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CCNL2Q96S94 520 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SLC30A3Q99726 388 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 IFT27Q9BW83 186 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KAT8Q9H7Z6 458 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 LYRM4Q9HD34 91 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KLRF1Q9NZS2 232 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SSR3Q9UNL2 185 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PCDHGB5Q9Y5G0 923 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PKDREJQ9NTG1 2253 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ECM29Q5VYK3 1845 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PGRMC2O15173 223 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 NUDT21O43809 227 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GREM1O60565 184 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 NSA2O95478 260 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DCTN2Q13561 401 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RGNQ15493 299 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ABHD17BQ5VST6 288 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 C5orf46Q6UWT4 87 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PAMR1Q6UXH9 720 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RPP25Q9BUL9 199 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PIGUQ9H490 435 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 POLE3Q9NRF9 147 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PNO1Q9NRX1 252 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 FTSJ1Q9UET6 329 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TBC1D29Q9UFV1 150 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 BAIAP2Q9UQB8 552 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CSPG4Q6UVK1 2322 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TRIP12Q14669 1992 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 WWP2O00308 870 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SLC30A4O14863 429 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 HCRTR2O43614 444 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TBX19O60806 448 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ZFAND5O76080 213 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 C8orf89P0DMQ9 161 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SLC6A8P48029 635 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RELAQ04206 551 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 SF3B4Q15427 424 aaKnown RBP eCLIP6.5□□□□□ -1.378e-8■■■□□ 18.8
SF3B1-201ENST00000335508 ARMCX4Q5H9R4 360 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KRTCAP2Q8N6L1 136 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 Q8N9G6 341 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 MOSPD2Q8NHP6 518 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF764Q96H86 408 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 C3orf30Q96M34 536 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 OR1F2PQ96R84 312 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PIP5K1AQ99755 562 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 METTL7AQ9H8H3 244 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 MBNL1Q9NR56 388 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 DAPP1Q9UN19 280 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms