RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CAMK1Q14012 370 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 LTB4RQ15722 352 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 UBE3DQ7Z6J8 389 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 TRIM48Q8IWZ4 208 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 ZFPM2Q8WW38 1151 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 SLC35G5Q96KT7 338 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 AHSPQ9NZD4 102 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 PEX16Q9Y5Y5 336 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 KIAA0355O15063 1070 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 MID1O15344 667 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 HMGN2P05204 90 aaKnown RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 SLC35G4P0C7Q5 338 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 KELP23276 732 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 PSMA1P25786 263 aaKnown RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 ID2Q02363 134 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 CCDC85BQ15834 202 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF181Q2M3W8 571 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 FAM131AQ6UXB0 335 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 VRK2Q86Y07 508 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 NEURL3Q96EH8 262 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TMEM80Q96HE8 168 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 NECTIN4Q96NY8 510 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 E9PQ18 207 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 APOA1P02647 267 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 RFX3P48380 749 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 MAN2A2P49641 1150 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 SEC13P55735 322 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 OR2B6P58173 313 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 OLR1P78380 273 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 HNRNPA1L2Q32P51 320 aaKnown RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 SAXO2Q658L1 398 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 DCUN1D3Q8IWE4 304 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 SUSD6Q92537 303 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 CXorf40BQ96DE9 158 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TBX5Q99593 518 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 AICDAQ9GZX7 198 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 COMMD3Q9UBI1 195 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 ATG4BQ9Y4P1 393 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1B0GVC2 190 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 A6NIN4 97 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 H3BQ06 376 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 CHRM4P08173 479 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 MAGEA8P43361 318 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 CCR8P51685 355 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 WSCD2Q2TBF2 565 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 KIAA1161Q6NSJ0 714 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 PDZD3Q86UT5 571 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TP53I13Q8NBR0 393 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 FAM46AQ96IP4 442 aaKnown RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TP63Q9H3D4 680 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TBC1D17Q9HA65 648 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 TBC1D24Q9ULP9 559 aa20.13■□□□□ 0.81
TRIM28-201ENST00000253024 FAM183AA6NL82 134 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 DVL2O14641 736 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 FUT1P19526 365 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 SDC2P34741 201 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF33BQ06732 778 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 FBXO43Q4G163 708 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 FLYWCH1Q4VC44 716 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 SLC30A6Q6NXT4 461 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 ERN2Q76MJ5 926 aaKnown RBP20.12■□□□□ 0.81
TRIM28-201ENST00000253024 GET4Q7L5D6 327 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-201ENST00000253024 TMEFF1Q8IYR6 380 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 OR5P2Q8WZ92 322 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 A4GNTQ9UNA3 340 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 GRXCR1A8MXD5 290 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 RB1P06400 928 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 CERS1P27544 350 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 RPS25P62851 125 aaKnown RBP20.12■□□□□ 0.81
TRIM28-201ENST00000253024 TMPRSS11AQ6ZMR5 421 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 NUDT13Q86X67 352 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 SMG7Q92540 1137 aaKnown RBP20.12■□□□□ 0.81
TRIM28-201ENST00000253024 TTYH2Q9BSA4 534 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 DKK3Q9UBP4 350 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 CFL2Q9Y281 166 aa20.12■□□□□ 0.81
TRIM28-201ENST00000253024 ARID1BQ8NFD5 2236 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1W2PP55 124 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1W2PQ09 198 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 GPR4P46093 362 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 KCNJ5P48544 419 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 SLAMF1Q13291 335 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 CCDC80Q76M96 950 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 UBASH3BQ8TF42 649 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ASB15Q8WXK1 588 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ZBED6CLQ96FA7 236 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 CRELD1Q96HD1 420 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF354BQ96LW1 612 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 DCLRE1CQ96SD1 692 aaKnown RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 INSM2Q96T92 566 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 TMED9Q9BVK6 235 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 MKLN1Q9UL63 735 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 GPSM3Q9Y4H4 160 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 INSL6Q9Y581 213 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 IGKV1-8A0A0C4DH67 115 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ZC3H12DA2A288 527 aaKnown RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 TAF4O00268 1085 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 EPPINO95925 133 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ITGB7P26010 798 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 RACK1P63244 317 aaKnown RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 CDK3Q00526 305 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms