RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 A6NCN8 305 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 CCDC159P0C7I6 412 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 ADNP2Q6IQ32 1131 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 SHQ1Q6PI26 577 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 ATOH1Q92858 354 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 HIST1H2AAQ96QV6 131 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 ACSS2Q9NR19 701 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 WSB2Q9NYS7 404 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 GRHPRQ9UBQ7 328 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 PCDHGA12O60330 932 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 GNALP38405 381 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 NUBP1P53384 320 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 AGERQ15109 404 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 OR13H1Q8NG92 308 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 RAB2BQ8WUD1 216 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 ALG14Q96F25 216 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 TRNT1Q96Q11 434 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 TESQ9UGI8 421 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 SLC22A7Q9Y694 548 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 LINC01565O15544 149 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 CYC1P08574 325 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 MRPL19P49406 292 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 KIAA0907Q7Z7F0 614 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 PRSS58Q8IYP2 241 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 HDAC2Q92769 488 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 MAELQ96JY0 434 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 CNDP2Q96KP4 475 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 MRGPRX3Q96LB0 322 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 SLC6A18Q96N87 628 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 TMEM9Q9P0T7 183 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 TMEM181Q9P2C4 612 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 LRRC42Q9Y546 428 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 C2orf92A0A1B0GVN3 265 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 A8MUA0 341 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 H6PDO95479 791 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 SLC35E2P0CK97 266 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 DNASE1L1P49184 302 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PTGR1Q14914 329 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 KHDC1Q4VXA5 237 aaKnown RBP12.93□□□□□ -0.34
LDLR-201ENST00000252444 TRIM61Q5EBN2 209 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 GPR153Q6NV75 609 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 FANK1Q8TC84 345 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 FNDC8Q8TC99 324 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 NT5CQ8TCD5 201 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 CANT1Q8WVQ1 401 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 TRUB1Q8WWH5 349 aaKnown RBP12.93□□□□□ -0.34
LDLR-201ENST00000252444 BCL7BQ9BQE9 202 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 GAREM1Q9H706 876 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PGRMC2O15173 223 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PRSS56P0CW18 603 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 SIGLEC14Q08ET2 396 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 TMEM107Q6UX40 140 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 VN1R5Q7Z5H4 357 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 LOXL4Q96JB6 756 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 SLC46A1Q96NT5 459 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 COQ10BQ9H8M1 238 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 MCCC2Q9HCC0 563 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 TRIM36Q9NQ86 728 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 ENPP4Q9Y6X5 453 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 A8MVJ9 347 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 ZNF879B4DU55 563 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PIGGQ5H8A4 983 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PLEKHG7Q6ZR37 379 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 NANOS1Q8WY41 292 aaKnown RBP12.93□□□□□ -0.34
LDLR-201ENST00000252444 STACQ99469 402 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 CHRDQ9H2X0 955 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 LDAHQ9H6V9 325 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 HPF1Q9NWY4 346 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 IKZF2Q9UKS7 526 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 DAPL1A0PJW8 107 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 SYT5O00445 386 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 MSX1P28360 303 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 FGF14Q92915 247 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PEX11GQ96HA9 241 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 PEX16Q9Y5Y5 336 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 MAU2Q9Y6X3 613 aa12.93□□□□□ -0.34
LDLR-201ENST00000252444 EIF4E1BA6NMX2 242 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 MAGP20916 626 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 GABRB3P28472 473 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 TGFBR2P37173 567 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 PITPNAQ00169 270 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 USP43Q70EL4 1123 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR4K1Q8NGD4 311 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR52A5Q9H2C5 316 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 A0A1B0GX78 115 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CENPBD1B2RD01 187 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 ARL6IP5O75915 188 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 RPLP0P05388 317 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 GLB1P16278 677 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 PPP1R3AQ16821 1122 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 KCTD21Q4G0X4 260 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 SYCE2Q6PIF2 218 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 FAM83HQ6ZRV2 1179 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR2T33Q8NG76 320 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 GAB3Q8WWW8 586 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 GDF15Q99988 308 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 KAT8Q9H7Z6 458 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 H0YGG7 62 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CTNSO60931 367 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR5F1O95221 314 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms