RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KCNG3Q8TAE7 436 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 BIRC8Q96P09 236 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MS4A7Q9GZW8 240 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TAS2R13Q9NYV9 303 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 BFARQ9NZS9 450 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 HCN3Q9P1Z3 774 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CDYLQ9Y232 598 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MMACHCQ9Y4U1 282 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GJE1A6NN92 205 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF701M0R085 212 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 M0R2Z0 102 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SUV39H1O43463 412 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TGFB1P01137 390 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ITGB2P05107 769 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TPH1P17752 444 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DRD4P21917 467 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RAB9AP51151 201 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CTSWP56202 376 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR5I1Q13606 314 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DAG1Q14118 895 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 INAVAQ3KP66 663 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM119Q4V9L6 283 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC26A11Q86WA9 606 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CHPT1Q8WUD6 406 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 C14orf79Q96F83 325 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TIMD4Q96H15 378 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CMKLR1Q99788 373 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SGIP1Q9BQI5 828 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 NEUROG2Q9H2A3 272 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FOXJ2Q9P0K8 574 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 POLA1P09884 1462 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 A0A1W2PRB8 838 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PHOX2AO14813 284 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHGA12O60330 932 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DPM1O60762 260 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF28P17035 718 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CA4P22748 312 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 NR0B1P51843 470 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CRYBB1P53674 252 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SMAGPQ0VAQ4 97 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 EIPR1Q53HC9 387 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TSEN54Q7Z6J9 526 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GCNT2Q8N0V5 402 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 THEM5Q8N1Q8 247 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GUF1Q8N442 669 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PCDH20Q8N6Y1 951 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR5L2Q8NGL0 311 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GPR151Q8TDV0 419 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CYB5D2Q8WUJ1 264 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FOXJ1Q92949 421 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MAGEB5Q9BZ81 275 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ALX4Q9H161 411 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SAR1AQ9NR31 198 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MED17Q9NVC6 651 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM45AQ9NWC5 275 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHGC4Q9Y5F7 938 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CNTNAP2Q9UHC6 1331 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KLRF2D3W0D1 207 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 IFNA5P01569 189 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ITGAMP11215 1152 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 UQCRC2P22695 453 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MATKP42679 507 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TLE3Q04726 772 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CLN3Q13286 438 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GK2Q14410 553 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 BCL2A1Q16548 175 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OGFRL1Q5TC84 451 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LRRC66Q68CR7 880 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RFWD3Q6PCD5 774 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 BEND7Q8N7W2 519 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DCBLD1Q8N8Z6 715 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SDR9C7Q8NEX9 313 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR7G2Q8NG99 324 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LIPHQ8WWY8 451 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DNASE2BQ8WZ79 361 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SPSB4Q96A44 273 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 IGSF21Q96ID5 467 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RPL10LQ96L21 214 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR5B12Q96R08 314 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FMO2Q99518 471 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 EPYCQ99645 322 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TRMOQ9BU70 441 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MOB1AQ9H8S9 216 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TBC1D17Q9HA65 648 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM9Q9P0T7 183 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SERGEFQ9UGK8 458 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TLR4O00206 839 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC22A5O76082 557 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MT-ND5P03915 603 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ABHD2P08910 425 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GSPT1P15170 499 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FABP6P51161 128 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RBM11P57052 281 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SOX8P57073 446 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ST8SIA6P61647 398 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RPS16P62249 146 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DNM1P34Q6PK57 102 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PAQR7Q86WK9 346 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM132CQ8N3T6 1108 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DCUN1D4Q92564 292 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms