RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SOX3P41225 446 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 EFNB1P98172 346 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CDK3Q00526 305 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TARDBPQ13148 414 aaKnown RBP eCLIP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 BCL2A1Q16548 175 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 KIAA1161Q6NSJ0 714 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 KIAA1211LQ6NV74 962 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CCBE1Q6UXH8 406 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TP53I13Q8NBR0 393 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 ST13P5Q8NFI4 369 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 BBS10Q8TAM1 723 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CREB3L4Q8TEY5 395 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 SLC35G5Q96KT7 338 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 AMDHD1Q96NU7 426 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 BARHL1Q9BZE3 327 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 OR51I1Q9H343 314 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 GLIPR2Q9H4G4 154 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 IL23AQ9NPF7 189 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 MAN2C1Q9NTJ4 1040 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 FBXL12Q9NXK8 326 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 PCDH10Q9P2E7 1040 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 DEC1Q9P2X7 70 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 KLHL3Q9UH77 587 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 HCN2Q9UL51 889 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 DIMT1Q9UNQ2 313 aaKnown RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 HYKKA2RU49 373 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 DYRK3O43781 588 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TPST2O60704 377 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 PSMA1P25786 263 aaKnown RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CTNNB1P35222 781 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CASP3P42574 277 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 GJA8P48165 433 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 PCYT1AP49585 367 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CSNK1G2P78368 415 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 COL4A3Q01955 1670 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 PIN1Q13526 163 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-203ENST00000631321 LRIT3Q3SXY7 679 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 OR4C11Q6IEV9 310 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TMEM64Q6YI46 380 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TCEANCQ8N8B7 351 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 AMER3Q8N944 861 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 LINC01555Q8NAE3 123 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 SETD6Q8TBK2 473 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 SLC35B4Q969S0 331 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CEP19Q96LK0 163 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 KCNS3Q9BQ31 491 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TM7SF3Q9NS93 570 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 NUP210Q8TEM1 1887 aaPredicted RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 OR1F1O43749 312 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 LCMT2O60294 686 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 NME6O75414 186 aaPredicted RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 NFATC1O95644 943 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 APOA1P02647 267 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 PPP2R1BP30154 601 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 VIPR2P41587 438 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 RORCP51449 518 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 ENTPD8Q5MY95 495 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF697Q5TEC3 545 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 FAM46CQ5VWP2 391 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TMC5Q6UXY8 1006 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 ZER1Q7Z7L7 766 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 MMAAQ8IVH4 418 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 MORN4Q8NDC4 146 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 IL17RDQ8NFM7 739 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 UCN3Q969E3 161 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TRMT61AQ96FX7 289 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 DPH7Q9BTV6 452 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 AICDAQ9GZX7 198 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 MIR1-1HGQ9H1L0 117 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SLC35C2Q9NQQ7 365 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 MRPS18AQ9NVS2 196 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 NPAP1Q9NZP6 1156 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TESQ9UGI8 421 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TCF20Q9UGU0 1960 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 OTOL1A6NHN0 477 aaPredicted RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 C1QTNF3-AMACRE9PGA6 284 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 H3BQ06 376 aaPredicted RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 M0R3H8 397 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 ASNA1O43681 348 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 PRKYO43930 277 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 EPPINO95925 133 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 LGI1O95970 557 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 NR2F1P10589 423 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TNNI3P19429 210 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 MMP11P24347 488 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 KHKP50053 298 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 CDK5Q00535 292 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TMEM35AQ53FP2 167 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SYT14P1Q58G82 188 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 PIP5KL1Q5T9C9 394 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 C1orf94Q6P1W5 598 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SFTPA1Q8IWL2 248 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 PHC2Q8IXK0 858 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TTLQ8NG68 377 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SFXN5Q8TD22 340 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 XAGE5Q8WWM1 108 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 OR2A14Q96R47 310 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 CTRCQ99895 268 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SPATA5L1Q9BVQ7 753 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms