RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 OR6F1Q8NGZ6 308 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PIK3R3Q92569 461 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MAGEB10Q96LZ2 347 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 TBX5Q99593 518 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 OR51I1Q9H343 314 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 TMEM38AQ9H6F2 299 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 REV1Q9UBZ9 1251 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 ARID1BQ8NFD5 2236 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MEIOCA2RUB1 952 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 HMGN4O00479 90 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 NDUFB5O43674 189 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 EFEMP2O95967 443 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 SCG5P05408 212 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 UQCRC2P22695 453 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MMP11P24347 488 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 IRS1P35568 1242 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 TIE1P35590 1138 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MMP12P39900 470 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 VIPR2P41587 438 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 CRYBB2P43320 205 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 FNDC3BQ53EP0 1204 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PGBD2Q6P3X8 592 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 SPRED2Q7Z698 418 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 GRASPQ7Z6J2 395 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 ZER1Q7Z7L7 766 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 GALNT12Q8IXK2 581 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 CCDC116Q8IYX3 515 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 ATP6V1C2Q8NEY4 427 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 KAT2AQ92830 837 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 COL26A1Q96A83 441 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 ANKHQ9HCJ1 492 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MYNNQ9NPC7 610 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PLXND1Q9Y4D7 1925 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 SCN3AQ9NY46 2000 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PRUNE2Q8WUY3 3088 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 C2orf92A0A1B0GVN3 265 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PCCBP05166 539 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 C6P13671 934 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 ERVFC1P60507 584 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 SNRPD2P62316 118 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 VASH1Q7L8A9 365 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 DGLUCYQ7Z3D6 616 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 CAMKMTQ7Z624 323 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 NXPE3Q969Y0 559 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 NELL2Q99435 816 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 SPATA9Q9BWV2 254 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 FBXW2Q9UKT8 454 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PRAMEF27A3QJZ7 478 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CPSF4LA6NMK7 179 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SMLR1H3BR10 107 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SEMA3DO95025 777 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 RHOP08100 348 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 PTX3P26022 381 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SSR2P43308 183 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 AVPR1BP47901 424 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 GJA8P48165 433 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF770Q6IQ21 691 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF544Q6NX49 715 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SDK1Q7Z5N4 2213 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 GHDCQ8N2G8 530 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 C9orf43Q8TAL5 461 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SMPDL3AQ92484 453 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 TP53INP1Q96A56 240 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 TM4SF18Q96CE8 201 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 NUS1Q96E22 293 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 C16orf58Q96GQ5 468 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 C11orf54Q9H0W9 315 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SERHL2Q9H4I8 314 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 TXNL4BQ9NX01 149 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 V9GYH0 126 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF24P17028 368 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 MYL12AP19105 171 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 RAB8AP61006 207 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 HTRA3P83110 453 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 LARS2Q15031 903 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 PDZD3Q86UT5 571 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 KRT73Q86Y46 540 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 TM9SF4Q92544 642 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF689Q96CS4 500 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 MRGPRX3Q96LB0 322 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 LGR4Q9BXB1 951 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 NXF2Q9GZY0 626 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 IMP3Q9NV31 184 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CLEC4AQ9UMR7 237 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 KCNE3Q9Y6H6 103 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CEP290O15078 2479 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ALPK2Q86TB3 2170 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CCDC182A6NF36 153 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 DVL2O14641 736 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CASKO14936 926 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 LCMT2O60294 686 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 PSKH1P11801 424 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SLC6A11P48066 632 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CLCNKAP51800 687 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 BCL2A1Q16548 175 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF791Q3KP31 576 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 RNASE12Q5GAN4 147 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 MLIPQ5VWP3 458 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SLC30A6Q6NXT4 461 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 RRM2BQ7LG56 351 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms