RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FGF2P09038 288 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 GABRB1P18505 474 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 IL4RP24394 825 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 GJB2P29033 226 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 UQCRC1P31930 480 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RORAP35398 523 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SERPINH1P50454 418 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RPL15P61313 204 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CFHR3Q02985 330 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 KLHL30Q0D2K2 578 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RPA4Q13156 261 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 OLIG2Q13516 323 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 LASP1Q14847 261 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 MEP1BQ16820 701 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RUNDC3AQ59EK9 446 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 NHSL2Q5HYW2 709 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TOR1AIP1Q5JTV8 583 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 GKAP1Q5VSY0 366 aaPredicted RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 MLIPQ5VWP3 458 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM211Q6ICI0 200 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CCDC144NLQ6NUI1 221 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 FBXL22Q6P050 247 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 DOK6Q6PKX4 331 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 KDELC1Q6UW63 502 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SUSD1Q6UWL2 747 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 GSG1LQ6UXU4 331 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CCDC73Q6ZRK6 1079 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 PAQR7Q86WK9 346 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TBC1D21Q8IYX1 336 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SIX6OS1Q8N1H7 587 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 GUF1Q8N442 669 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 C4orf32Q8N8J7 132 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 DCAF4L2Q8NA75 395 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 FBXO30Q8TB52 745 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 FAM222BQ8WU58 562 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SLC25A28Q96A46 364 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TMCO6Q96DC7 493 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 FAR2Q96K12 515 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 KLHL15Q96M94 604 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 NSMCE3Q96MG7 304 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SERPINB11Q96P15 392 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 WDFY2Q96P53 400 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 PRMT1Q99873 361 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CCDC106Q9BWC9 280 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 UBXN6Q9BZV1 441 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 LHPPQ9H008 270 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 OSGEPL1Q9H4B0 414 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 LIN28AQ9H9Z2 209 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 KCNK9Q9NPC2 374 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TBC1D7Q9P0N9 293 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 AMACRQ9UHK6 382 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 NOCTQ9UK39 431 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RAB21Q9UL25 225 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 UBE2J1Q9Y385 318 aaPredicted RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 PCM1Q15154 2024 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CCDC88CQ9P219 2028 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 MPDZO75970 2070 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 LOC100653049A0A140TA62 436 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 LILRA5A6NI73 299 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 EIF3CLB5ME19 914 aaKnown RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 CLIC1O00299 241 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PAGE4O60829 102 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 NOL3O60936 208 aaKnown RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 KRT34O76011 436 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 WDR47O94967 919 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 VENTXO95231 258 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 GCNT3O95395 438 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF30P17039 623 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ERCC2P18074 760 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TFEBP19484 476 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 EPHA3P29320 983 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 HTR7P34969 479 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM23P36406 574 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 CASP3P42574 277 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 CTSCP53634 463 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 MFAP4P55083 255 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SLC8A3P57103 927 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 FAM3BP58499 235 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 YBEYP58557 167 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 DAOAP59103 153 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PPP1CAP62136 330 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TUBB4BP68371 445 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 HTD2P86397 168 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 EFNB1P98172 346 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TIAL1Q01085 375 aaKnown RBP eCLIP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 CACNG1Q06432 222 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ELP6Q0PNE2 266 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ABRQ12979 859 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 CSTF3Q12996 717 aaKnown RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ORC2Q13416 577 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TNK1Q13470 666 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PTK6Q13882 451 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TUBB2AQ13885 445 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 IL17AQ16552 155 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PRTGQ2VWP7 1150 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SPOPLQ6IQ16 392 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PNCKQ6P2M8 343 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM81Q6P7N7 255 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 GDPD4Q6W3E5 623 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms