RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NRG3P56975 720 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 RPP38P78345 283 aaKnown RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 TFF3Q07654 80 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 RPS6KA2Q15349 733 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 NTRK2Q16620 822 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 CCNYL2Q5T2Q4 361 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 C1orf185Q5T7R7 199 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 TMEM198Q66K66 360 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 LYPD8Q6UX82 237 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 MILR1Q7Z6M3 343 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 CDH24Q86UP0 819 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 CLYBLQ8N0X4 340 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 OR4K14Q8NGD5 310 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 DIO2Q92813 273 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 ISL2Q96A47 359 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 NSUN5Q96P11 429 aaKnown RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 TREX2Q9BQ50 279 aaPredicted RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 ZNF559Q9BR84 538 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 NTMT1Q9BV86 223 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 ELOVL6Q9H5J4 265 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 CXorf21Q9HAI6 301 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 SLC24A3Q9HC58 644 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 NPDC1Q9NQX5 325 aaPredicted RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 ZNF358Q9NW07 568 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 TEX10Q9NXF1 929 aaPredicted RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 QPCTLQ9NXS2 382 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 ADAM29Q9UKF5 820 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 PCTPQ9UKL6 214 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 CHCHD2Q9Y6H1 151 aaPredicted RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 ITPR2Q14571 2701 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 GOLGA6L10A6NI86 522 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 LRRC3CA6NJW4 275 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 POC1B-GALNT4F8VUJ3 575 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 PGRMC2O15173 223 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 LRATO95237 230 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 OTCP00480 354 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 CLPSP04118 112 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 RFPL3SP0C7P2 107 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 GLI4P10075 376 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 COL6A2P12110 1019 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 IGFBP2P18065 325 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 KRT15P19012 456 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 ENDOUP21128 410 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 NT5EP21589 574 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 GDF1P27539 372 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 DEKP35659 375 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 MAGEA12P43365 314 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MASP1P48740 699 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MAPK12P53778 367 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 KRTAP10-9P60411 292 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 TRAF3Q13114 568 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MYBPHQ13203 477 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 GGTA1PQ4G0N0 100 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 SGO1Q5FBB7 561 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 UBAP2Q5T6F2 1119 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 ADGRD1Q6QNK2 874 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 TMEM200AQ86VY9 491 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 DMRTC2Q8IXT2 367 aaPredicted RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 LRRC25Q8N386 305 aaPredicted RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 MNS1Q8NEH6 495 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MYRIPQ8NFW9 859 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 OR4F6Q8NGB9 312 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 NEIL3Q8TAT5 605 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 SELENOMQ8WWX9 145 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 IFT81Q8WYA0 676 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 ZNF592Q92610 1267 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 UCN3Q969E3 161 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 TP53INP1Q96A56 240 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MRPL57Q9BQC6 102 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 FUT8Q9BYC5 575 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MRPL1Q9BYD6 325 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 OR10A5Q9H207 317 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 SLC6A15Q9H2J7 730 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 MRPL46Q9H2W6 279 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 ACKR4Q9NPB9 350 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 SPRR3Q9UBC9 169 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 ZNF180Q9UJW8 692 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 CNOT11Q9UKZ1 510 aaKnown RBP9.01□□□□□ -0.97
VRK3-216ENST00000599342 SNX6Q9UNH7 406 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 SLC12A4Q9UP95 1085 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 CFL2Q9Y281 166 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 PCDHGB3Q9Y5G1 929 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 FAM215AQ9Y5M1 114 aa9.01□□□□□ -0.97
VRK3-216ENST00000599342 CSMD2Q7Z408 3487 aa9□□□□□ -0.97
VRK3-216ENST00000599342 CACNA1CQ13936 2221 aa9□□□□□ -0.97
VRK3-216ENST00000599342 CSMD1Q96PZ7 3565 aa9□□□□□ -0.97
VRK3-216ENST00000599342 A0A087WUV0 522 aaPredicted RBP9□□□□□ -0.97
VRK3-216ENST00000599342 C15orf38-AP3S2A0A0A6YYH1 394 aa9□□□□□ -0.97
VRK3-216ENST00000599342 A0A0G2JNJ9 132 aa9□□□□□ -0.97
VRK3-216ENST00000599342 A0A1W2PS29 197 aa9□□□□□ -0.97
VRK3-216ENST00000599342 C1orf226A1L170 272 aa9□□□□□ -0.97
VRK3-216ENST00000599342 ANKRD33BA6NCL7 494 aa9□□□□□ -0.97
VRK3-216ENST00000599342 TRIM49D1C9J1S8 452 aa9□□□□□ -0.97
VRK3-216ENST00000599342 SNX4O95219 450 aa9□□□□□ -0.97
VRK3-216ENST00000599342 RPS17P08708 135 aaKnown RBP9□□□□□ -0.97
VRK3-216ENST00000599342 CT62P0C5K7 136 aa9□□□□□ -0.97
VRK3-216ENST00000599342 CPMP14384 443 aa9□□□□□ -0.97
VRK3-216ENST00000599342 PORP16435 677 aaPredicted RBP9□□□□□ -0.97
VRK3-216ENST00000599342 POU3F2P20265 443 aaPredicted RBP9□□□□□ -0.97
VRK3-216ENST00000599342 TRPC1P48995 793 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms