RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TP53P04637 393 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 NID1P14543 1247 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ALOX15P16050 662 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ZNF37AP17032 561 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 HIST1H1TP22492 207 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 CHMP24386 653 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 PTPN6P29350 595 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 SOX18P35713 384 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 CD79BP40259 229 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 GDF5P43026 501 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 PGGT1BP53609 377 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 SLC37A1P57057 533 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 FAM27E3Q08E93 113 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ZNF267Q14586 743 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 AP5B1Q2VPB7 878 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 TMEM35AQ53FP2 167 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 PAGE2BQ5JRK9 111 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 TIGD3Q6B0B8 471 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ADNP2Q6IQ32 1131 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ENPP6Q6UWR7 440 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 DGAT2L6Q6ZPD8 337 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 UBE3DQ7Z6J8 389 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ADAMTSL2Q86TH1 951 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 FAM83FQ8NEG4 500 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 TMEM171Q8WVE6 324 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 TANKQ92844 425 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 PTCD3Q96EY7 689 aaKnown RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 VPS39Q96JC1 886 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 KRT12Q99456 494 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 EFCAB11Q9BUY7 163 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 RPF2Q9H7B2 306 aaKnown RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ZNF701Q9NV72 531 aaPredicted RBP9.22□□□□□ -0.93
TRIM28-210ENST00000597618 MS4A12Q9NXJ0 267 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 CLCF1Q9UBD9 225 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 ROS1P08922 2347 aa9.22□□□□□ -0.93
TRIM28-210ENST00000597618 NINQ8N4C6 2090 aa9.21□□□□□ -0.93
TRIM28-210ENST00000597618 C2orf92A0A1B0GVN3 265 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 A0A1W2PNV4 684 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 RTCAO00442 366 aaKnown RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 CLGNO14967 610 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 OR10H2O60403 315 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 SMNDC1O75940 238 aaKnown RBP eCLIP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 TLX1P31314 330 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 CASP3P42574 277 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 SSR2P43308 183 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 ATP5J2P56134 94 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 NRG3P56975 720 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 SRYQ05066 204 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 PCDH1Q08174 1060 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 TNK1Q13470 666 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 SETDB1Q15047 1291 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 C18orf21Q32NC0 220 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 SPANXN3Q5MJ09 141 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 HLA-DQA1Q5Y7H0 255 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 TMEM64Q6YI46 380 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 YRDCQ86U90 279 aaKnown RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 GRAMD2AQ8IUY3 354 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 TCAIMQ8N3R3 496 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 NKAPQ8N5F7 415 aaKnown RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 OR1J4Q8NGS1 313 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 IGFBPL1Q8WX77 278 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 RIT1Q92963 219 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 TP53INP1Q96A56 240 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 RHBDF1Q96CC6 855 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 WDR34Q96EX3 536 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 MARK4Q96L34 752 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 FAM111AQ96PZ2 611 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 HS3ST6Q96QI5 342 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 MS4A8Q9BY19 250 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 PHACTR1Q9C0D0 580 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 CNOT10Q9H9A5 744 aaKnown RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 PRM3Q9NNZ6 103 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 DNAJC11Q9NVH1 559 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 ADGRE2Q9UHX3 823 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF490Q9ULM2 529 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-210ENST00000597618 USF3Q68DE3 2245 aa9.21□□□□□ -0.94
TRIM28-210ENST00000597618 GNB5O14775 395 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 TLX2O43763 284 aaPredicted RBP9.2□□□□□ -0.94
TRIM28-210ENST00000597618 SOX30O94993 753 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CLPSP04118 112 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CRHP06850 196 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 RHOXF2BP0C7M4 288 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 KRT15P19012 456 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 PTMSP20962 102 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CCKARP32238 428 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 UGT2B10P36537 528 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 TNFRSF17Q02223 184 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 LAPTM5Q13571 262 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 DOC2AQ14183 400 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CAPRIN1Q14444 709 aaKnown RBP9.2□□□□□ -0.94
TRIM28-210ENST00000597618 TSNQ15631 228 aaKnown RBP9.2□□□□□ -0.94
TRIM28-210ENST00000597618 HIST2H2ACQ16777 129 aaPredicted RBP9.2□□□□□ -0.94
TRIM28-210ENST00000597618 KBTBD12Q3ZCT8 623 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 HIST2H2AA3Q6FI13 130 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 OR2A2Q6IF42 318 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 ANGPTL8Q6UXH0 198 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 HIPK1Q86Z02 1210 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 TMEM139Q8IV31 216 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 NAT8LQ8N9F0 302 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 OR14L1PQ8NHC6 308 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms