RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.17□□□□□ -1.74
NUP88-213ENST00000576862 PET117Q6UWS5 81 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 CENPQQ7L2Z9 268 aaPredicted RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 ANKRD46Q86W74 232 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 RNF130Q86XS8 419 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 ITPRIPQ8IWB1 547 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 SPAG16Q8N0X2 631 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 DRAXINQ8NBI3 349 aaPredicted RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 UXS1Q8NBZ7 420 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 ANKRD20A12PQ8NF67 263 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 SHC3Q92529 594 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 VPS39Q96JC1 886 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 CITED2Q99967 270 aaPredicted RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 LZTS2Q9BRK4 669 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 TEX13BQ9BXU2 312 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 NACAP1Q9BZK3 213 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 DBF4Q9UBU7 674 aaPredicted RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 CAB39Q9Y376 341 aaPredicted RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 STYXL1Q9Y6J8 313 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 RGS12O14924 1447 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 ABCC4O15439 1325 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 STRCQ7RTU9 1775 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 MEGF6O75095 1541 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ILVBLA1L0T0 632 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ANKDD1BA6NHY2 528 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 YDJCA8MPS7 323 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ANHXE9PGG2 379 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 AP3B1O00203 1094 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 CACNB4O00305 520 aaPredicted RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 IFIT3O14879 490 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 WDR46O15213 610 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 ZNF749O43361 778 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 NOL3O60936 208 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 STAM2O75886 525 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 RHOXF2BP0C7M4 288 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SKILP12757 684 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 GAP43P17677 238 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ITIH1P19827 911 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 CASTP20810 708 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 IFNAR2P48551 515 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 GPC3P51654 580 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 POLR2FP61218 127 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 CNTN1Q12860 1018 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 MAPK11Q15759 364 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ZNF674Q2M3X9 581 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 RABL6Q3YEC7 729 aaPredicted RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 CEP55Q53EZ4 464 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ARMCX4Q5H9R4 360 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SLC27A4Q6P1M0 643 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SHQ1Q6PI26 577 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 ANGPTL8Q6UXH0 198 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 C17orf107Q6ZR85 190 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SLC25A42Q86VD7 318 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 C4orf19Q8IY42 314 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SIX6OS1Q8N1H7 587 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 TMCO5AQ8N6Q1 288 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 CCDC148Q8NFR7 591 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 CNDP1Q96KN2 507 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 CCDC114Q96M63 670 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ZNF396Q96N95 335 aaPredicted RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 RHOXF2Q9BQY4 288 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ATG101Q9BSB4 218 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 API5Q9BZZ5 524 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 LSG1Q9H089 658 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 TNMDQ9H2S6 317 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 SEPT10Q9P0V9 454 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 GMEB2Q9UKD1 530 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 ITGA11Q9UKX5 1188 aa4.16□□□□□ -1.74
NUP88-213ENST00000576862 NOSIPQ9Y314 301 aaKnown RBP4.16□□□□□ -1.74
NUP88-213ENST00000576862 RGPD8O14715 1765 aaPredicted RBP4.15□□□□□ -1.74
NUP88-213ENST00000576862 KDM6AO15550 1401 aaPredicted RBP4.15□□□□□ -1.74
NUP88-213ENST00000576862 LTBP4Q8N2S1 1624 aa4.15□□□□□ -1.74
NUP88-213ENST00000576862 SERINC4A6NH21 518 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 UBXN8O00124 270 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 CTDSPLO15194 276 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 BCL2L11O43521 198 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 SCO2O43819 266 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 FMO6PO60774 539 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 SLU7O95391 586 aaKnown RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 ANGPTL1O95841 491 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 TMOD1P28289 359 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 PBLDP30039 288 aaPredicted RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 NPBWR1P48145 328 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 CSRP3P50461 194 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 SLC26A5P58743 744 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 YWHAHQ04917 246 aaPredicted RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 SCN1BQ07699 218 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 KLHL30Q0D2K2 578 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 CETN1Q12798 172 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 ABRQ12979 859 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 MORF4L2Q15014 288 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 SIX1Q15475 284 aaPredicted RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 KNOP1Q1ED39 458 aaKnown RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 FILIP1LQ4L180 1135 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 IYDQ6PHW0 289 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 KCNMB4Q86W47 210 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 OR4N5Q8IXE1 308 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 MYOCDQ8IZQ8 938 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 SMPDL3AQ92484 453 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 NABP1Q96AH0 204 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms