RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RPS25P62851 125 aaKnown RBP9.12□□□□□ -0.95
CCDC40-212ENST00000574799 DUSP4Q13115 394 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 CTXN3Q4LDR2 81 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 ALG1LQ6GMV1 187 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 NOXRED1Q6NXP6 359 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 LHFPL3Q86UP9 236 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 NAGSQ8N159 534 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 MEIOBQ8N635 442 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 SAMD12Q8N8I0 201 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 OR7D4Q8NG98 312 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 RAET1EQ8TD07 263 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 CREB3L1Q96BA8 519 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 ZNF689Q96CS4 500 aaPredicted RBP9.12□□□□□ -0.95
CCDC40-212ENST00000574799 ELMOD3Q96FG2 381 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 FOPNLQ96NB1 174 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 NLE1Q9NVX2 485 aaPredicted RBP9.12□□□□□ -0.95
CCDC40-212ENST00000574799 NDUFAF4Q9P032 175 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 H2AFY2Q9P0M6 372 aaPredicted RBP9.12□□□□□ -0.95
CCDC40-212ENST00000574799 ELF5Q9UKW6 265 aaPredicted RBP9.12□□□□□ -0.95
CCDC40-212ENST00000574799 CORO2BQ9UQ03 480 aa9.12□□□□□ -0.95
CCDC40-212ENST00000574799 hCG_1807616A0A1W2PRN6 198 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CD8B2A6NJW9 211 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 F11P03951 625 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CD8BP10966 210 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ETFAP13804 333 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ELOAQ14241 798 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GRIN2CQ14957 1233 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 SF1Q15637 639 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CLLU1Q5K131 121 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 KIAA1324Q6UXG2 1013 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 RNF175Q8N4F7 328 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 MARC2Q969Z3 335 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 LINC00052Q96N35 136 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 IFT22Q9H7X7 185 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 NT5DC2Q9H857 520 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 HMX1Q9NP08 348 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CTPS2Q9NRF8 586 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 SEMA3GQ9NS98 782 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TMEM184CQ9NVA4 438 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GMEB2Q9UKD1 530 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 A0A0G2JPF8 293 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 HNRNPCL3B7ZW38 293 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GMDSO60547 372 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 S100A9P06702 114 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 HNRNPCL4P0DMR1 293 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 LAMP1P11279 417 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 HLA-EP13747 358 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 SLC16A1P53985 500 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 IL10RBQ08334 325 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ABRQ12979 859 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 MLLT11Q13015 90 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 BOP1Q14137 746 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 KIAA0040Q15053 153 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PTPRRQ15256 657 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TAF1AQ15573 450 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 HKDC1Q2TB90 917 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GLYR1Q49A26 553 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ALKAL2Q6UX46 152 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ANKRD33Q7Z3H0 272 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 OR7G3Q8NG95 312 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 NMNAT1Q9HAN9 279 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 MED16Q9Y2X0 877 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PCDHB9Q9Y5E1 797 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CHP2O43745 196 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PPM1BO75688 479 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ALDOBP05062 364 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ACPPP15309 386 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 CRYBB2P43320 205 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 SELENOWP63302 87 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 SERINC3Q13530 473 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GPR176Q14439 515 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 DUSP6Q16828 381 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 LRIF1Q5T3J3 769 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 C3P1Q6ZMU1 363 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ZNF366Q8N895 744 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PROKR2Q8NFJ6 384 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TTLQ8NG68 377 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 OR4K1Q8NGD4 311 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GEMIN6Q8WXD5 167 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TM9SF4Q92544 642 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 USP7Q93009 1102 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TOE1Q96GM8 510 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 C12orf57Q99622 126 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 THAP7Q9BT49 309 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 TMEM43Q9BTV4 400 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 KATNB1Q9BVA0 655 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 GSDMCQ9BYG8 508 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 OR6C2Q9NZP2 312 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PPT2Q9UMR5 302 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 EDARQ9UNE0 448 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ZFR2Q9UPR6 939 aaKnown RBP9.11□□□□□ -0.95
CCDC40-212ENST00000574799 ZNF175Q9Y473 711 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PCDHB11Q9Y5F2 797 aa9.11□□□□□ -0.95
CCDC40-212ENST00000574799 PDCD5O14737 125 aa9.1□□□□□ -0.95
CCDC40-212ENST00000574799 BET1O15155 118 aa9.1□□□□□ -0.95
CCDC40-212ENST00000574799 LRRTM2O43300 516 aa9.1□□□□□ -0.95
CCDC40-212ENST00000574799 PCDH7O60245 1069 aa9.1□□□□□ -0.95
CCDC40-212ENST00000574799 ABLIM3O94929 683 aa9.1□□□□□ -0.95
CCDC40-212ENST00000574799 RAB36O95755 333 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms