RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PER2O15055 1255 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RAD51BO15315 384 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TAPBPO15533 448 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 FFAR2O15552 330 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RGS14O43566 566 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 KDELR3O43731 214 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 OR1I1O60431 355 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 BRINP1O60477 761 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ACSL4O60488 711 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 DUSP11O75319 330 aaKnown RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 SEC22BO75396 215 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 NDUFS3O75489 264 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CLDN11O75508 207 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PRKD3O94806 890 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 INMTO95050 263 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ANGPTL1O95841 491 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CST1P01037 141 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MT-ND2P03891 347 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 S100BP04271 92 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 IL6P05231 212 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 OR4Q2P0C623 313 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PIRTP0C851 137 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PRPS2P11908 318 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 AKR1A1P14550 325 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 NCF1P14598 390 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 PTPN2P17706 415 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 GPX2P18283 190 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SDC1P18827 310 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IGFBP5P24593 272 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 NFKBIAP25963 317 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 OR1E1P30953 314 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 HOXA9P31269 272 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CD52P31358 61 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 FMO4P31512 558 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 UGT2B10P36537 528 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ETV6P41212 452 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RXRGP48443 463 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SERPINB10P48595 397 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PIK3CGP48736 1102 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CDKN1CP49918 316 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 DGKQP52824 942 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IST1P53990 364 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CDH4P55283 916 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TPD52P55327 224 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 CLDN8P56748 225 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 HUNKP57058 714 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RPS14P62263 151 aaKnown RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 RPL36AP83881 106 aaKnown RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 ARF5P84085 180 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 BEX3Q00994 111 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IFITM3Q01628 133 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 EMX1Q04741 257 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 CACNG1Q06432 222 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ZNF33BQ06732 778 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ITKQ08881 620 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SMARCB1Q12824 385 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TCF15Q12870 199 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SLC14A1Q13336 389 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RAPSNQ13702 412 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ATP1A4Q13733 1029 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 GTF2H2Q13888 395 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 E2F2Q14209 437 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PTGR1Q14914 329 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CLCA4Q14CN2 919 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MAD2L1BPQ15013 274 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 ABRAXAS2Q15018 415 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PON2Q15165 354 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 INPP5JQ15735 1006 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 CCL14Q16627 93 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MAPKAPK3Q16644 382 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 HIST2H2ACQ16777 129 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 PHKG1Q16816 387 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MEP1AQ16819 746 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 DGUOKQ16854 277 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IMPG1Q17R60 797 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 AP5B1Q2VPB7 878 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ADPRMQ3LIE5 342 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ZIK1Q3SY52 487 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 FAM174BQ3ZCQ3 159 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 FUT11Q495W5 492 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 GTDC1Q4AE62 458 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IQCCQ4KMZ1 466 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 RFTN2Q52LD8 501 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 FBXO48Q5FWF7 155 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TOR1AIP1Q5JTV8 583 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CLLU1OSQ5K130 101 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SPANXN4Q5MJ08 99 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 LDLRAP1Q5SW96 308 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PRAMEF19Q5SWL8 479 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 C1QTNF12Q5T7M4 302 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CACHD1Q5VU97 1274 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MLIPQ5VWP3 458 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 EGFLAMQ63HQ2 1017 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CXorf57Q6NSI4 855 aaKnown RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 GTF2H2CQ6P1K8 395 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TMEM53Q6P2H8 277 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 FAHD1Q6P587 224 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ERICH5Q6P6B1 374 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 IL27RAQ6UWB1 636 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CERS6Q6ZMG9 384 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms