RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DEFB126Q9BYW3 111 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CLMPQ9H6B4 373 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 EPS8L2Q9H6S3 715 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CXorf21Q9HAI6 301 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 SDR39U1Q9NRG7 319 aaPredicted RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 ACSS1Q9NUB1 689 aaPredicted RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 TMEM45AQ9NWC5 275 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 TUBD1Q9UJT1 453 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ERVK-19Q9WJR5 959 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 PCDHGB7Q9Y5F8 929 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 PCDHGA9Q9Y5G4 932 aaKnown RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 DMXL2Q8TDJ6 3036 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CCDC88CQ9P219 2028 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CACNA1BQ00975 2339 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 GMNCA6NCL1 334 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 GABRR3A8MPY1 467 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CDK2AP1O14519 115 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 COQ9O75208 318 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 SLC22A3O75751 556 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CEACAM4O75871 244 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 ZFAND5O76080 213 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 S100A3P33764 101 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 MRPL19P49406 292 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 MANFP55145 182 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 PGS1Q32NB8 556 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 HLA-DQA1Q5Y7H0 255 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 ANKRD26P1Q6NSI1 321 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 SPATA21Q7Z572 469 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 RIMKLAQ8IXN7 391 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CCDC116Q8IYX3 515 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 KRTCAP2Q8N6L1 136 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 NFAM1Q8NET5 270 aaPredicted RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 OR7A2PQ8NGA2 310 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 OR8J2Q8NGG1 315 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 OR9A2Q8NGT5 310 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 OR8K3Q8NH51 312 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 RFWD2Q8NHY2 731 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 BRIX1Q8TDN6 353 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 ELP5Q8TE02 316 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 UCN3Q969E3 161 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 CRELD1Q96HD1 420 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 MARK4Q96L34 752 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 ZNF354BQ96LW1 612 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 AMDHD1Q96NU7 426 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 MESP1Q9BRJ9 268 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 SLC25A23Q9BV35 468 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 SEMA4CQ9C0C4 833 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 DDX18Q9NVP1 670 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 FAM120CQ9NX05 1096 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 FAM53CQ9NYF3 392 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 MAT2BQ9NZL9 334 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 PRODH2Q9UF12 536 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 PCDHGB4Q9UN71 923 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 EXO1Q9UQ84 846 aaKnown RBP9.39□□□□□ -0.91
USP3-216ENST00000559873 GPR45Q9Y5Y3 372 aa9.39□□□□□ -0.91
USP3-216ENST00000559873 A0A087WV62 115 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MYOCOSA0A1B0GUC4 107 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 A0A1W2PRB8 838 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 DYTNA2CJ06 578 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 A6NL46 340 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 WASHC1A8K0Z3 465 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 FCHO1O14526 889 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ANKRD28O15084 1053 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 DNAJB5O75953 348 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 DDAH2O95865 285 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 IGKV3-11P04433 115 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 IL6P05231 212 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ITGAMP11215 1152 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 NCF2P19878 526 aaPredicted RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 CASRP41180 1078 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 FRKP42685 505 aaPredicted RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 GYS2P54840 703 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 NME5P56597 212 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 KCNK10P57789 538 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 PSPHP78330 225 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 PRR5P85299 388 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 FUT7Q11130 342 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MAP4K2Q12851 820 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 HSPB3Q12988 150 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 KCNAB2Q13303 367 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MLC1Q15049 377 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MEP1AQ16819 746 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 PRICKLE4Q2TBC4 344 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ZNF750Q32MQ0 723 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 FAM174BQ3ZCQ3 159 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ZNF628Q5EBL2 1059 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ABHD17BQ5VST6 288 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 TMEM198Q66K66 360 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 FAM180BQ6P0A1 224 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 BHLHB9Q6PI77 547 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ISLR2Q6UXK2 745 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MSANTD1Q6ZTZ1 278 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 APCDD1LQ8NCL9 501 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 C9orf43Q8TAL5 461 aaPredicted RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 SUN3Q8TAQ9 357 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 NUBPLQ8TB37 319 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 OR5P2Q8WZ92 322 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 MOAP1Q96BY2 351 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 COQ8BQ96D53 544 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 WBP1Q96G27 269 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms