RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OR2G6Q5TZ20 316 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 ZNF793Q6ZN11 406 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 OR6T1Q8NGN1 323 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 OR5P2Q8WZ92 322 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 MENTQ9BUN1 341 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 DPEP2Q9H4A9 486 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 SYNPO2LQ9H987 977 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 A4GALTQ9NPC4 353 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 TIGARQ9NQ88 270 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 CNOT2Q9NZN8 540 aaKnown RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 PLEKHM1Q9Y4G2 1056 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 UGT2A1Q9Y4X1 527 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 SH3D21A4FU49 640 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 PRR23AA6NEV1 266 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 A8MVJ9 347 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 PGRMC2O15173 223 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 CAPN5O15484 640 aaPredicted RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 ADAP00813 363 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 SCG5P05408 212 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 FHP07954 510 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 CTNNB1P35222 781 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 SOX6P35712 828 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 MLLT1Q03111 559 aaPredicted RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 ILKQ13418 452 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 CAMK1Q14012 370 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 TUBA3EQ6PEY2 450 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 LCTLQ6UWM7 567 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 CASP12Q6UXS9 341 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 IKBIPQ70UQ0 350 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 DGLUCYQ7Z3D6 616 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 UBE2J2Q8N2K1 259 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 JPH3Q8WXH2 748 aaPredicted RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 CEP19Q96LK0 163 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 TRNT1Q96Q11 434 aaKnown RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 SLC30A2Q9BRI3 323 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 OSGEPL1Q9H4B0 414 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 GLIPR2Q9H4G4 154 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 EGLN3Q9H6Z9 239 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 TIMP1P01033 207 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 KELP23276 732 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 CD79BP40259 229 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 ETV5P41161 510 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 CASP3P42574 277 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 MAPK9P45984 424 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 ETV1P50549 477 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 HEPACAMQ14CZ8 416 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 SLX4IPQ5VYV7 408 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 IQCHQ86VS3 1027 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 DCUN1D3Q8IWE4 304 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 ZFP41Q8N8Y5 198 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 SYT14Q8NB59 555 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 IL17RDQ8NFM7 739 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 SETD7Q8WTS6 366 aaKnown RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 ASB15Q8WXK1 588 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 KLHL6Q8WZ60 621 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 C16orf58Q96GQ5 468 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 TXNDC15Q96J42 360 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 ZNF354BQ96LW1 612 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 DPH7Q9BTV6 452 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 FZD3Q9NPG1 666 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 MBNL1Q9NR56 388 aaKnown RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 MAN2C1Q9NTJ4 1040 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 NR2F1P10589 423 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 GPC1P35052 558 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 BMPR1AP36894 532 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 CAV3P56539 151 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 SNRPNP63162 240 aaKnown RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 NDUFAF5Q5TEU4 345 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 TMC5Q6UXY8 1006 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 OR8D1Q8WZ84 308 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 UBE2E3Q969T4 207 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 TMEM80Q96HE8 168 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 LRR1Q96L50 414 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 LINC00615Q96LM1 132 aaPredicted RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 TRMT61BQ9BVS5 477 aaKnown RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 SMURF1Q9HCE7 757 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 ZCCHC3Q9NUD5 404 aaKnown RBP12.18□□□□□ -0.46
LDLR-207ENST00000558013 CFL2Q9Y281 166 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 A3GALT2U3KPV4 340 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 COL4A3Q01955 1670 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 PTPRSQ13332 1948 aa12.18□□□□□ -0.46
LDLR-207ENST00000558013 C17orf113A0A1B0GUU1 675 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 NDUFS4O43181 175 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 NARSO43776 548 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 EPHX1P07099 455 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 SSTR4P31391 388 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CSTF2P33240 577 aaKnown RBP eCLIP12.17□□□□□ -0.46
LDLR-207ENST00000558013 FUT5Q11128 374 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 GINS1Q14691 196 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 LASP1Q14847 261 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 ZNF79Q15937 498 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 GAB4Q2WGN9 574 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ETFBKMTQ8IXQ9 262 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR4K5Q8NGD3 323 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR9Q1Q8NGQ5 310 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR5K2Q8NHB8 316 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 C9orf43Q8TAL5 461 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR2A14Q96R47 310 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 AIF1LQ9BQI0 150 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 AHSPQ9NZD4 102 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms