RNA–Protein interactions for RNA: ENST00000546869.1

DDX54-203, Transcript of DEAD-box helicase 54, humanhuman

TSL 3

Gene DDX54, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-203ENST00000546869 MAPRE3Q9UPY8 281 aa13.46□□□□□ -0.25
DDX54-203ENST00000546869 TLN1Q9Y490 2541 aaKnown RBP13.46□□□□□ -0.26
DDX54-203ENST00000546869 ATRXP46100 2492 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 TRBV11-1A0A0K0K1C0 115 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 A0A1W2PS29 197 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 ZNF195O14628 629 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 SUV39H1O43463 412 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 BCAS2O75934 225 aaPredicted RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 C1QL1O75973 258 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 TGDSO95455 350 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 LBPP18428 481 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 SOX18P35713 384 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 FEN1P39748 380 aaKnown RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 FRKP42685 505 aaPredicted RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 NFATC3Q12968 1075 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 ZNF267Q14586 743 aaPredicted RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 TLR1Q15399 786 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 MPEG1Q2M385 716 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 ZNF750Q32MQ0 723 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 CCDC116Q8IYX3 515 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 LIX1Q8N485 282 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 NATD1Q8N6N6 113 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 SUN3Q8TAQ9 357 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 EXOSC8Q96B26 276 aaKnown RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 MAT2BQ9NZL9 334 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 MYOTQ9UBF9 498 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 GIMAP2Q9UG22 337 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 BAIAP2L1Q9UHR4 511 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 ATP6V1HQ9UI12 483 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 RALYQ9UKM9 306 aaKnown RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 ENTPD4Q9Y227 616 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 B3GNT3Q9Y2A9 372 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 YARS2Q9Y2Z4 477 aaKnown RBP13.45□□□□□ -0.26
DDX54-203ENST00000546869 PCDHGB6Q9Y5F9 930 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 SCN2AQ99250 2005 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 DOCK10Q96BY6 2186 aa13.45□□□□□ -0.26
DDX54-203ENST00000546869 OR5H15A6NDH6 313 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 GABRR3A8MPY1 467 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 HRKO00198 91 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 SDHDO14521 159 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 FCHO1O14526 889 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 DYNC1I1O14576 645 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 WDPCPO95876 746 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CLPSP04118 112 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CT62P0C5K7 136 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 PRPS1L1P21108 318 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CD97P48960 835 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 TNFSF10P50591 281 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CLDN8P56748 225 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 DUSP2Q05923 314 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 PRSS53Q2L4Q9 553 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 ZNF628Q5EBL2 1059 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 C6orf163Q5TEZ5 329 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 RPUSD3Q6P087 351 aaKnown RBP13.44□□□□□ -0.26
DDX54-203ENST00000546869 RNF111Q6ZNA4 994 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 SPATA19Q7Z5L4 167 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 RIMKLAQ8IXN7 391 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 GPALPP1Q8IXQ4 340 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 BEST3Q8N1M1 668 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 VWA5B2Q8N398 1253 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 SLC15A4Q8N697 577 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 ZNF321PQ8N8H1 164 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 ZNF615Q8N8J6 731 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 C17orf47Q8NEP4 570 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 ACTRT2Q8TDY3 377 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 TP53INP1Q96A56 240 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 TSSK3Q96PN8 268 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CNPPD1Q9BV87 410 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 ACSS1Q9NUB1 689 aaPredicted RBP13.44□□□□□ -0.26
DDX54-203ENST00000546869 ERVK-19Q9WJR5 959 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 CFL2Q9Y281 166 aa13.44□□□□□ -0.26
DDX54-203ENST00000546869 A0A087WV62 115 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 TRAV17A0A0B4J275 112 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PLOD2O00469 737 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PRKNO60260 465 aaPredicted RBP13.43□□□□□ -0.26
DDX54-203ENST00000546869 MAN1A2O60476 641 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PLOD3O60568 738 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 SORBS2O94875 1100 aaKnown RBP13.43□□□□□ -0.26
DDX54-203ENST00000546869 KITP10721 976 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 G6PDP11413 515 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 NT5EP21589 574 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 CASRP41180 1078 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 HLCSP50747 726 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 ARG2P78540 354 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 C19orf57Q0VDD7 668 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 TUBA3CQ13748 450 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PTGR1Q14914 329 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 MLC1Q15049 377 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PLEKHN1Q494U1 663 aaPredicted RBP13.43□□□□□ -0.26
DDX54-203ENST00000546869 PIGGQ5H8A4 983 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 SLC6A19Q695T7 634 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 TUBA3EQ6PEY2 450 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 EPGNQ6UW88 154 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 CAMKMTQ7Z624 323 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 C9orf40Q8IXQ3 194 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 HORMAD2Q8N7B1 307 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 CEP70Q8NHQ1 597 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 CDC26Q8NHZ8 85 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 STON2Q8WXE9 905 aa13.43□□□□□ -0.26
DDX54-203ENST00000546869 PPCDCQ96CD2 204 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms