RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	TMEFF2	Q9UIK5	374 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	ERRFI1	Q9UJM3	462 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	ANGPTL3	Q9Y5C1	460 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	SPACA6	W5XKT8	324 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	EXOC1L	A0A1B0GW35	172 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ASPDH	A6ND91	283 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	C22orf46	C9J442	243 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440		H0YIV9	168 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	STX16-NPEPL1	H3BU86	382 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	CYR61	O00622	381 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	FCHO1	O14526	889 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	STX16	O14662	325 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	NEURL1	O76050	574 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	MYO1D	O94832	1006 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	LDLR	P01130	860 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	RBP1	P09455	135 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	RNF224	P0DH78	156 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	PCNA	P12004	261 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	COL6A2	P12110	1019 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	PRKCA	P17252	672 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	HIST1H1T	P22492	207 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ATP5A1	P25705	553 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TRHR	P34981	398 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	SSR2	P43308	183 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	CLCN2	P51788	898 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	HNRNPF	P52597	415 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	MLF1	P58340	268 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	GTF2H2	Q13888	395 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ELAVL1	Q15717	326 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	C10orf62	Q5T681	223 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	KHDRBS2	Q5VWX1	349 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	BICRAL	Q6AI39	1079 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	GTF2H2C	Q6P1K8	395 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF793	Q6ZN11	406 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TRMT10C	Q7L0Y3	403 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	GOLGA7	Q7Z5G4	137 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	RPS19BP1	Q86WX3	136 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	MYLK4	Q86YV6	388 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	IFT20	Q8IY31	132 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZCCHC7	Q8N3Z6	543 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TEX9	Q8N6V9	391 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	ACOT4	Q8N9L9	421 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	L3MBTL4	Q8NA19	623 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TMEM178A	Q8NBL3	297 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TMEM52	Q8NDY8	209 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	C7orf57	Q8NEG2	295 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	HUS1B	Q8NHY5	278 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	DCAKD	Q8WVC6	231 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TRIM44	Q96DX7	344 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	SIGLEC12	Q96PQ1	595 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	F2RL3	Q96RI0	385 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	JMJD8	Q96S16	334 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	TRIM45	Q9H8W5	580 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	KCMF1	Q9P0J7	381 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	CPSF2	Q9P2I0	782 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	XPR1	Q9UBH6	696 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	MCM8	Q9UJA3	840 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	NFU1	Q9UMS0	254 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	MAST4	O15021	2626 aa		7.15	□□□□□ -1.26
SNHG1-223	ENST00000545440	NBPF19	A0A087WUL8	3843 aa		7.15	□□□□□ -1.27
SNHG1-223	ENST00000545440	TRBV11-1	A0A0K0K1C0	115 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	TRIM49D1	C9J1S8	452 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	POC1B-GALNT4	F8VUJ3	575 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	PLPP1	O14494	284 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	NME2P1	O60361	137 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	CTNS	O60931	367 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	SMIM24	O75264	130 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLC25A12	O75746	678 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	SEMA3D	O95025	777 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	SIX3	O95343	332 aa	Predicted RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	MLYCD	O95822	493 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	RPS17	P08708	135 aa	Known RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	STS	P08842	583 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	EEF1D	P29692	281 aa	Known RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	PPP2R1B	P30154	601 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	CYB561	P49447	251 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	HCFC1	P51610	2035 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	GPR143	P51810	404 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	RAP1GDS1	P52306	607 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	PER3	P56645	1201 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	TNFRSF17	Q02223	184 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	OC90	Q02509	493 aa	Predicted RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	STX4	Q12846	297 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	CUL3	Q13618	768 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	DDX39B	Q13838	428 aa	Known RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	SERTAD2	Q14140	314 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	AP5B1	Q2VPB7	878 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	GGTA1P	Q4G0N0	100 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	DEPDC1	Q5TB30	811 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	CLNK	Q7Z7G1	428 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	LCA5	Q86VQ0	697 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	TMEM132C	Q8N3T6	1108 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	PTGR2	Q8N8N7	351 aa	Predicted RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	FAM98A	Q8NCA5	519 aa	Known RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR14A16	Q8NHC5	309 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	ABHD4	Q8TB40	342 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	DAZL	Q92904	295 aa	Known RBP	7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	NCLN	Q969V3	563 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	RGMA	Q96B86	450 aa		7.14	□□□□□ -1.27
SNHG1-223	ENST00000545440	MTBP	Q96DY7	904 aa		7.14	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms