RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TEX10Q9NXF1 929 aaPredicted RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 ZNF226Q9NYT6 803 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PHF11Q9UIL8 331 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CES1P1Q9UKY3 287 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 MKLN1Q9UL63 735 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CLDN25C9JDP6 229 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 RTCAO00442 366 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 OCM2P0CE71 109 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 OCMP0CE72 109 aaPredicted RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 F3P13726 295 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GSTM3P21266 225 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 MPIP34949 423 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TGFBR2P37173 567 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 UGT2B15P54855 530 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 RGS1Q08116 209 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 BNIP3Q12983 259 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TIMM50Q3ZCQ8 353 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 MANEAQ5SRI9 462 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 C12orf73Q69YU5 71 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GPR153Q6NV75 609 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 NIPAL1Q6NVV3 410 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TUBA3EQ6PEY2 450 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ZNF793Q6ZN11 406 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 NRROSQ86YC3 692 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ACOT4Q8N9L9 421 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 DYNC2LI1Q8TCX1 351 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GGHQ92820 318 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 PMM1Q92871 262 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 FGF14Q92915 247 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 EXOSC8Q96B26 276 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 PLEKHA8Q96JA3 519 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 NIPSNAP1Q9BPW8 284 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 PBX4Q9BYU1 374 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 AICDAQ9GZX7 198 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 NKX2-4Q9H2Z4 354 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 SIAEQ9HAT2 523 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TRNAU1APQ9NX07 287 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 SEC14L3Q9UDX4 400 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 DUSP12Q9UNI6 340 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 KCNK6Q9Y257 313 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 HS3ST3A1Q9Y663 406 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 A0A1W2PQF6 199 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 IRGMA1A4Y4 181 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 PDZK1P1A8MUH7 402 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 M0R3G1 203 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 AXIN1O15169 862 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 B4GALT2O60909 372 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 HOXB2P14652 356 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GLULP15104 373 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ZNF10P21506 573 aaPredicted RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 CHMP24386 653 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ELAVL4P26378 380 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 EPHA2P29317 976 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 PEBP1P30086 187 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 GPC1P35052 558 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TIE1P35590 1138 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 NUDT1P36639 197 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 SLC15A1P46059 708 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 HSPB3Q12988 150 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 HTR4Q13639 388 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 LRRC32Q14392 662 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 SPCS2Q15005 226 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 DUSP7Q16829 419 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TCTN3Q6NUS6 607 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 KLHL17Q6TDP4 642 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ADCK2Q7Z695 626 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 AMIGO1Q86WK6 493 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 AQP11Q8NBQ7 271 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GANCQ8TET4 914 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 PRRC1Q96M27 445 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 MYOCQ99972 504 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 TREX2Q9BQ50 279 aaPredicted RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 OR51I1Q9H343 314 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 MS4A12Q9NXJ0 267 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 GPSM3Q9Y4H4 160 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 ENTPD2Q9Y5L3 495 aa9.32□□□□□ -0.92
SS18-205ENST00000542420 CFAP20Q9Y6A4 193 aaKnown RBP9.32□□□□□ -0.92
SS18-205ENST00000542420 FANCMQ8IYD8 2048 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 DUXAA6NLW8 204 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 PCDH17O14917 1159 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 HAT1O14929 419 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 ERI3O43414 337 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 SLC28A2O43868 658 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SH3BP5O60239 455 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SULT1C4O75897 302 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SOX30O94993 753 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 LGI1O95970 557 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 CHRM5P08912 532 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 SMIM10L1P0DMW3 83 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 CDH3P22223 829 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 PSMB9P28065 219 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 CTHP32929 405 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 IFNGR2P38484 337 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 WASP42768 502 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 OR1E2P47887 323 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 EIF2B2P49770 351 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 BMXP51813 675 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 NCBP2P52298 156 aaKnown RBP eCLIP9.31□□□□□ -0.921e-8■■■□□ 16.9
SS18-205ENST00000542420 MAPK10P53779 464 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 LIM2P55344 173 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms