RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SLC22A4Q9H015 551 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ABCG4Q9H172 646 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ZBTB20Q9HC78 741 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 CNIH4Q9P003 139 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 MARK1Q9P0L2 795 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ENPP4Q9Y6X5 453 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 OR6C74A6NCV1 312 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ALPLP05186 524 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 PIM1P11309 404 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ACVR1BP36896 505 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 GCGRP47871 477 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 SLC6A11P48066 632 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ADNP2Q6IQ32 1131 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 GRHL2Q6ISB3 625 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 KRT77Q7Z794 578 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ECHDC3Q96DC8 303 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 CLMPQ9H6B4 373 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ZFR2Q9UPR6 939 aaKnown RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ARAP2Q8WZ64 1704 aa11.15□□□□□ -0.63
SYNPO-204ENST00000519664 LATS1O95835 1130 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 BMPR1AP36894 532 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NAA10P41227 235 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 SOX2P48431 317 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CLK3P49761 638 aaKnown RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 MBTPS1Q14703 1052 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ABHD13Q7L211 337 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF548Q8NEK5 533 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 SMPDL3BQ92485 455 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 SMARCD2Q92925 531 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 PHOX2BQ99453 314 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 GPER1Q99527 375 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 TM9SF2Q99805 663 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NMNAT1Q9HAN9 279 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CENPMQ9NSP4 180 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 INTS6Q9UL03 887 aaKnown RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 IGLV3-10A0A075B6K4 115 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 TRAV6A0A075B6T7 132 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ANXA2P2A6NMY6 339 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 I3L521 148 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ANXA2P07355 339 aaKnown RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 DEFB110Q30KQ9 67 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 OR2A12Q8NGT7 310 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NEIL3Q8TAT5 605 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF300Q96RE9 604 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 RACGAP1Q9H0H5 632 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 MAGIXQ9H6Y5 334 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 COMMD9Q9P000 198 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 B3GNT3Q9Y2A9 372 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CD8B2A6NJW9 211 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 PCDH17O14917 1159 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NUAK1O60285 661 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 KLF8O95600 359 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CA3P07451 260 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CD8BP10966 210 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NDUFS1P28331 727 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 IL12BP29460 328 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 PYCR1P32322 319 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 IGFALSP35858 605 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CST6Q15828 149 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF791Q3KP31 576 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZC3H14Q6PJT7 736 aaKnown RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 PLEKHG7Q6ZR37 379 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 HTR3DQ70Z44 454 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 NATD1Q8N6N6 113 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CHPT1Q8WUD6 406 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 BHLHE41Q9C0J9 482 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CD300AQ9UGN4 299 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 GPR37L1O60883 481 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CEBPBP17676 345 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 SOX3P41225 446 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 WDR5P61964 334 aaKnown RBP11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF234Q14588 700 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 FAM214AQ32MH5 1076 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ALKBH2Q6NS38 261 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 IGFN1Q86VF2 1251 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 OR7G1Q8NGA0 311 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 ZSWIM3Q96MP5 696 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 DSN1Q9H410 356 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 CPNE5Q9HCH3 593 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 SLC35C2Q9NQQ7 365 aa11.14□□□□□ -0.63
SYNPO-204ENST00000519664 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CLCA1A8K7I4 914 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 VEGFDO43915 354 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RCBTB2O95199 551 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CAPNS1P04632 268 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 C1SP09871 688 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF3P17036 446 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 HMGA1P17096 107 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 EDNRAP25101 427 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CLDN2P57739 230 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RUNX3Q13761 415 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 SPCS2Q15005 226 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 OLIG3Q7RTU3 272 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 KLBQ86Z14 1044 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PROKR2Q8NFJ6 384 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 FAM46AQ96IP4 442 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GORASP2Q9H8Y8 452 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 SEC14L4Q9UDX3 406 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GNG8Q9UK08 70 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TAPBPO15533 448 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms