RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 DGAT2L6Q6ZPD8 337 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 RGS9BPQ6ZS82 235 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 WDR75Q8IWA0 830 aaKnown RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 CCDC116Q8IYX3 515 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 LIX1Q8N485 282 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 NATD1Q8N6N6 113 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 NUBPLQ8TB37 319 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 PNPLA2Q96AD5 504 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 EGLN2Q96KS0 407 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 TSSK3Q96PN8 268 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 PRPF18Q99633 342 aaKnown RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 ZBTB20Q9HC78 741 aaPredicted RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 BAIAP2L1Q9UHR4 511 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 ZNF223Q9UK11 482 aaPredicted RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 ERVK-19Q9WJR5 959 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 CFL2Q9Y281 166 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 B3GNT3Q9Y2A9 372 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 YARS2Q9Y2Z4 477 aaKnown RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 HEMK1Q9Y5R4 338 aaPredicted RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 A0A1W2PS29 197 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 MYO1GB0I1T2 1018 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 B8ZZF3 427 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 DYNC1I1O14576 645 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 TGDSO95455 350 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 WDPCPO95876 746 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PRPS1L1P21108 318 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 NTSP30990 170 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 HPCAL1P37235 193 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 CASRP41180 1078 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 RNF4P78317 190 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 C19orf57Q0VDD7 668 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PDE7AQ13946 482 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PRICKLE4Q2TBC4 344 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 ZNF750Q32MQ0 723 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 FCRLBQ6BAA4 426 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 OGFOD2Q6N063 350 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 RNF111Q6ZNA4 994 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 Q6ZS92 163 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 LARP4Q71RC2 724 aaKnown RBP eCLIP13.26□□□□□ -0.29
NUP54-216ENST00000514901 SLC29A4Q7RTT9 530 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PTRH1Q86Y79 214 aaKnown RBP13.26□□□□□ -0.29
NUP54-216ENST00000514901 RP1L1Q8IWN7 2480 aaPredicted RBP13.26□□□□□ -0.29
NUP54-216ENST00000514901 BEST3Q8N1M1 668 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 VWA5B2Q8N398 1253 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 ZNF843Q8N446 348 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 HORMAD2Q8N7B1 307 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 AMER2Q8N7J2 671 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 ZNF675Q8TD23 568 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PPCDCQ96CD2 204 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 CTHRC1Q96CG8 243 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 PPP1R36Q96LQ0 422 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 UTP23Q9BRU9 249 aaKnown RBP13.26□□□□□ -0.29
NUP54-216ENST00000514901 C1orf50Q9BV19 199 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 BRINP2Q9C0B6 783 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 MYOTQ9UBF9 498 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 MARCOQ9UEW3 520 aaPredicted RBP13.26□□□□□ -0.29
NUP54-216ENST00000514901 GIMAP2Q9UG22 337 aa13.26□□□□□ -0.29
NUP54-216ENST00000514901 EXO1Q9UQ84 846 aaKnown RBP13.26□□□□□ -0.29
NUP54-216ENST00000514901 CFAP46Q8IYW2 2715 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 TRAV17A0A0B4J275 112 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 OR5H15A6NDH6 313 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 GABRR3A8MPY1 467 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 SDHDO14521 159 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 AKAP10O43572 662 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 G6PDP11413 515 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 TRHRP34981 398 aaPredicted RBP13.25□□□□□ -0.29
NUP54-216ENST00000514901 CLDN8P56748 225 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 SLC37A1P57057 533 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 C21orf58P58505 322 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 MGAT2Q10469 447 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 MPEG1Q2M385 716 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 SPATA19Q7Z5L4 167 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 GPALPP1Q8IXQ4 340 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 ZNF321PQ8N8H1 164 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 SUN3Q8TAQ9 357 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 ACTRT2Q8TDY3 377 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 GFM2Q969S9 779 aaKnown RBP13.25□□□□□ -0.29
NUP54-216ENST00000514901 NPAS2Q99743 824 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.25□□□□□ -0.297e-10■■■■■ 34.7
NUP54-216ENST00000514901 OR10A5Q9H207 317 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 ATAD3AQ9NVI7 634 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 PLA2G3Q9NZ20 509 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 MAT2BQ9NZL9 334 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 SH3BP4Q9P0V3 963 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 ATP6V1HQ9UI12 483 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 ZNF639Q9UID6 485 aa13.25□□□□□ -0.29
NUP54-216ENST00000514901 PRRC2CQ9Y520 2896 aaKnown RBP13.25□□□□□ -0.29
NUP54-216ENST00000514901 TMEM200CA6NKL6 621 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 HRKO00198 91 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SCAMP2O15127 329 aaKnown RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 PDPK1O15530 556 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SUV39H1O43463 412 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ITGA10O75578 1167 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 C1QL1O75973 258 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 LRATO95237 230 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 PRB1P04280 392 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 IFI6P09912 130 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 CT62P0C5K7 136 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 S1PR1P21453 382 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SSTR4P31391 388 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms