RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ALAS2P22557 587 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PTBP1P26599 531 aaKnown RBP eCLIP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 MLLT3P42568 568 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CAV2P51636 162 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TAP2Q03519 686 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TLE4Q04727 773 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TMEM220Q6QAJ8 160 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF546Q86UE3 836 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CD163Q86VB7 1156 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ZFAND1Q8TCF1 268 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 SORCS1Q8WY21 1168 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 KCTD13Q8WZ19 329 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ACDQ96AP0 544 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 LMLNQ96KR4 655 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 SEC22CQ9BRL7 303 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 OR11A1Q9GZK7 315 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TLE6Q9H808 572 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 COQ3Q9NZJ6 369 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 KIF1BO60333 1816 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 RNF225M0QZC1 329 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SCAMP1O15126 338 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ABCC3O15438 1527 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLIT1O75093 1534 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC43A1O75387 559 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SOX14O95416 240 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 APOA2P02652 100 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 RAB6AP20340 208 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ADH7P40394 386 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CASP3P42574 277 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC1A3P43003 542 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 BLKP51451 505 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 GALNT1Q10472 559 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 KIAA1324Q6UXG2 1013 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 C15orf52Q6ZUT6 534 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF454Q8N9F8 522 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 DGAT2Q96PD7 388 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 OSBPL2Q9H1P3 480 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 FN3KRPQ9HA64 309 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CERS4Q9HA82 394 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 MEAF6Q9HAF1 191 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF286AQ9HBT8 521 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CTPS2Q9NRF8 586 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 RXFP3Q9NSD7 469 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 DZANK1Q9NVP4 752 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TP53TG5Q9Y2B4 290 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 NFS1Q9Y697 457 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 POMT1Q9Y6A1 747 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A0A6YYH2 397 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 A6NJ64 397 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF736B4DX44 427 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 MMP20O60882 483 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 DIRAS1O95057 198 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CH25HO95992 272 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SOX2P48431 317 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 HMGCS1Q01581 520 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 PAN3Q58A45 887 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SOHLH1Q5JUK2 328 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 RGL4Q8IZJ4 473 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 PLA2G15Q8NCC3 412 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 OR2T4Q8NH00 348 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SUN3Q8TAQ9 357 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 LRRN4Q8WUT4 740 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 UHRF1Q96T88 793 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 HBEGFQ99075 208 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 NMNAT2Q9BZQ4 307 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 PITHD1Q9GZP4 211 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SRMSQ9H3Y6 488 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 NPHP4O75161 1426 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 D6RAR5 112 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 NFKBIEO00221 500 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 EIF3FO00303 357 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 HLA-FP30511 346 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 HOXA9P31269 272 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 PCGF3Q3KNV8 242 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 LIPJQ5W064 366 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 AMZ2Q86W34 360 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TXNDC5Q8NBS9 432 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 WFIKKN2Q8TEU8 576 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZBTB8AQ96BR9 441 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 MSI2Q96DH6 328 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 DAZAP1Q96EP5 407 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF75AQ96N20 296 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TSGA13Q96PP4 275 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 IL12RB2Q99665 862 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 G6PC3Q9BUM1 346 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC6A17Q9H1V8 727 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 HIPK2Q9H2X6 1198 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 VRTNQ9H8Y1 702 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SACM1LQ9NTJ5 587 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TSPAN11A1L157 253 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC16A5O15375 505 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SDC3O75056 442 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 F10P00742 488 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 UNGP13051 313 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CASRP41180 1078 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF157P51786 506 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TAS2R19P59542 299 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TMPRSS7Q7RTY8 843 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TMEM173Q86WV6 379 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms