RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FRG2Q64ET8 278 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF585AQ6P3V2 769 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 MMGT1Q8N4V1 131 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 FAM13CQ8NE31 585 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 UCN3Q969E3 161 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 FRG2BQ96QU4 278 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 PAFAH2Q99487 392 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 UCK2Q9BZX2 261 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF703Q9H7S9 590 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 CXorf21Q9HAI6 301 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 PROK2Q9HC23 129 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 MCCC2Q9HCC0 563 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ZBTB26Q9HCK0 441 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ZFP64Q9NPA5 681 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 NPDC1Q9NQX5 325 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 DMGDHQ9UI17 866 aaKnown RBP15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ADAM29Q9UKF5 820 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ITGB1BP2Q9UKP3 347 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 FAM215AQ9Y5M1 114 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 CHCHD2Q9Y6H1 151 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 IKBKGQ9Y6K9 419 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 TRGV5A0A0B4J1U4 118 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 FOXO6A8MYZ6 492 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 PGRMC2O15173 223 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 WDR1O75083 606 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 PIK3R1P27986 724 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 MSX1P28360 303 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 KRTAP10-9P60411 292 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 NTRK2Q16620 822 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 GGTA1PQ4G0N0 100 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 WLSQ5T9L3 541 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 TTC19Q6DKK2 380 aaPredicted RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 RTL6Q6ICC9 239 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 B3GNT6Q6ZMB0 384 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 TAGAPQ8N103 731 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 LRRC25Q8N386 305 aaPredicted RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF441Q8N8Z8 693 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 OR10G3Q8NGC4 313 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 C16orf45Q96MC5 204 aaPredicted RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 NSUN5Q96P11 429 aaKnown RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 FMO2Q99518 471 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 TTYH2Q9BSA4 534 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 EXO5Q9H790 373 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 TEX10Q9NXF1 929 aaPredicted RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 QPCTLQ9NXS2 382 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 AHSPQ9NZD4 102 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 TNFRSF10DQ9UBN6 386 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 ACAD8Q9UKU7 415 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 CNOT11Q9UKZ1 510 aaKnown RBP15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 NCKAP5O14513 1909 aa15.25■□□□□ 0.03
CCDC28B-204ENST00000469003 C2orf92A0A1B0GVN3 265 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 A0A1W2PS29 197 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 LRRC3CA6NJW4 275 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 CAPN14A8MX76 684 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 KLK1P06870 262 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 RPS17P08708 135 aaKnown RBP15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 RFPL3SP0C7P2 107 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 GLI4P10075 376 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 ENDOUP21128 410 aaKnown RBP15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 CNTFP26441 200 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 SSTR4P31391 388 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 FUT7Q11130 342 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 IFT88Q13099 833 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 PAGE2Q7Z2X7 111 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 MILR1Q7Z6M3 343 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 GALNT12Q8IXK2 581 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 DMRTC2Q8IXT2 367 aaPredicted RBP15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 METTL4Q8N3J2 472 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 OR4K14Q8NGD5 310 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 OR10Q1Q8NGQ4 319 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 TP53INP1Q96A56 240 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 SPRR3Q9UBC9 169 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF180Q9UJW8 692 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 NAV3Q8IVL0 2385 aa15.24■□□□□ 0.03
CCDC28B-204ENST00000469003 ANKRD33BA6NCL7 494 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 TRIM49D1C9J1S8 452 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 POC1B-GALNT4F8VUJ3 575 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 HOXD4P09016 255 aaPredicted RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 CT62P0C5K7 136 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 GABRA1P14867 456 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 ZFP36L2P47974 494 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 TBCELQ5QJ74 424 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 CCNYL2Q5T2Q4 361 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 C1orf185Q5T7R7 199 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 HLA-DQA1Q5Y7H0 255 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 NOA1Q8NC60 698 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 MYRIPQ8NFW9 859 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 OR4F6Q8NGB9 312 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 DCAKDQ8WVC6 231 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 IFT81Q8WYA0 676 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 MRPL57Q9BQC6 102 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 DOHHQ9BU89 302 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 MRPL1Q9BYD6 325 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 MRPL46Q9H2W6 279 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 ELOVL6Q9H5J4 265 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 ACKR4Q9NPB9 350 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 B4GALT7Q9UBV7 327 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 PCDHGB3Q9Y5G1 929 aa15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 INTS1Q8N201 2190 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-204ENST00000469003 NINQ8N4C6 2090 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms