RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZDHHC2Q9UIJ5 367 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 FBXW2Q9UKT8 454 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 MRPS33Q9Y291 106 aaKnown RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 MMACHCQ9Y4U1 282 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 DNAJC15Q9Y5T4 150 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CSPG4Q6UVK1 2322 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 OR2W5A6NFC9 320 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 NPIPB8E9PQR5 432 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 SLC28A1O00337 649 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 CLDN4O14493 209 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ATP8B1O43520 1251 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 PRMT3O60678 531 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 PRAMEF2O60811 474 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 RSL1D1O76021 490 aaKnown RBP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 WISP2O76076 250 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 GBAP04062 536 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 KLK1P06870 262 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 FAM58BPP0C7Q3 252 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ITGAMP11215 1152 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 IGFBP2P18065 325 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 CPN2P22792 545 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 HNRNPFP52597 415 aaKnown RBP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 HSD17B7P56937 341 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 TNFRSF17Q02223 184 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ACSM2AQ08AH3 577 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 NSDHLQ15738 373 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 EXT1Q16394 746 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 BTBD16Q32M84 506 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ACSM2BQ68CK6 577 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 H3F3CQ6NXT2 135 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 LANCL3Q6ZV70 420 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 CXXC5Q7LFL8 322 aaKnown RBP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ANKRD37Q7Z713 158 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 GPR180Q86V85 440 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 SPPL2CQ8IUH8 684 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 SCUBE1Q8IWY4 988 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF595Q8IYB9 648 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 KIRREL3Q8IZU9 778 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 TMEM52Q8NDY8 209 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 M1APQ8TC57 530 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 TWIST2Q8WVJ9 160 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 TSLPQ969D9 159 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 APIPQ96GX9 242 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 MAGED4Q96JG8 741 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 PTCHD1Q96NR3 888 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 SORT1Q99523 831 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF559Q9BR84 538 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 TUBB1Q9H4B7 451 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF395Q9H8N7 513 aaPredicted RBP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 PRTFDC1Q9NRG1 225 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 STMN3Q9NZ72 180 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 MCM8Q9UJA3 840 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 HAO1Q9UJM8 370 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 RAP2CQ9Y3L5 183 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 CCL27Q9Y4X3 112 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 ASB4Q9Y574 426 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 PTGDR2Q9Y5Y4 395 aa11.09□□□□□ -0.63
SQSTM1-206ENST00000466342 IGKV3D-11A0A0A0MRZ8 115 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 IGHV3-20A0A0C4DH32 117 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 TCRBV16S1A1N1A0A5B0 115 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 PROM1O43490 865 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 RGS14O43566 566 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SNNO75324 88 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SEC24DO94855 1032 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 CELA2AP08217 269 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 NR2F6P10588 404 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 MAOAP21397 527 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 PRPH2P23942 346 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 TLX1P31314 330 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 BUD31P41223 144 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 MAPK12P53778 367 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 RAE1P78406 368 aaKnown RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 BTG2P78543 158 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 ACTN3Q08043 901 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SLC13A2Q13183 592 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SPDYAQ5MJ70 313 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 CCNYL2Q5T2Q4 361 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 ATG16L1Q676U5 607 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 NCCRP1Q6ZVX7 275 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 DDIASQ8IXT1 998 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 ZNF781Q8N8C0 355 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 OR2T11Q8NH01 316 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SUN3Q8TAQ9 357 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 THAP3Q8WTV1 239 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 PHF10Q8WUB8 498 aaKnown RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SDCCAG3Q96C92 435 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 C11orf24Q96F05 449 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 METTL2AQ96IZ6 378 aaKnown RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 ZNF354BQ96LW1 612 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 LPAR4Q99677 370 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 MANSC1Q9H8J5 431 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 NECTIN3Q9NQS3 549 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 THAP1Q9NVV9 213 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 SIRT5Q9NXA8 310 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 TEX10Q9NXF1 929 aaPredicted RBP11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 ATG4BQ9Y4P1 393 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 JMJD1CQ15652 2540 aa11.08□□□□□ -0.64
SQSTM1-206ENST00000466342 AKAP6Q13023 2319 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms