RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CXCR1P25024 350 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 RAG2P55895 527 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 Q6ZNX1 250 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 JAGN1Q8N5M9 183 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 OR2AP1Q8NGE2 309 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 EDEM1Q92611 657 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 L3HYPDHQ96EM0 354 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 CCNL2Q96S94 520 aaPredicted RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 TBL1XR1Q9BZK7 514 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 GPRC5CQ9NQ84 441 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 PCM1Q15154 2024 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 A8MUI8 341 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 ZNF286BP0CG31 522 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 SCGB2A2Q13296 93 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 FGFBP1Q14512 234 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 GPR19Q15760 415 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 SCGB2B2Q4G0G5 96 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 AARDQ4LEZ3 155 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 MANEALQ5VSG8 457 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 NT5C3BQ969T7 300 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 IKZF4Q9H2S9 585 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 NPIPA5E9PKD4 350 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 INHAP05111 366 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 CREB1P16220 341 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 BPIP17213 487 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 TAS2R40P59535 323 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 RPL23AP62750 156 aaKnown RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 COX19Q49B96 90 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 H3F3CQ6NXT2 135 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 GSX2Q9BZM3 304 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 NPIPA1Q9UND3 350 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 BAZ2AQ9UIF9 1905 aaKnown RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 NDUFV2P19404 249 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 CLCN3P51790 818 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 FNDC3BQ53EP0 1204 aaKnown RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 AADACL2Q6P093 401 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 PTERQ96BW5 349 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 TAAR1Q96RJ0 339 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 TNS2Q63HR2 1409 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CPED1A4D0V7 1026 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RAD1O60671 282 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TPMTP51580 245 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RING1Q06587 406 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 SCAPQ12770 1279 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PUM1Q14671 1186 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS53-204ENST00000437048 ELP2Q6IA86 826 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 IGFN1Q86VF2 1251 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 C2CD4AQ8NCU7 369 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 NSMAFQ92636 917 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FBXL18Q96ME1 805 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 POP1Q99575 1024 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 CHRDQ9H2X0 955 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FBXW11Q9UKB1 542 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MED6O75586 246 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PNMTP11086 282 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CASRP41180 1078 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 HCCSP53701 268 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PCLAFQ15004 111 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 LRRC46Q96FV0 321 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DHRS9Q9BPW9 319 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TSSK6Q9BXA6 273 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CNTNAP3Q9BZ76 1288 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ANKRD19PQ9H560 264 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DHDHQ9UQ10 334 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PCDHGA5Q9Y5G8 931 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OR51F1A6NGY5 319 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ELK1P19419 428 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 KDELR2P33947 212 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ETV3P41162 512 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TRA2BP62995 288 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 HMGCS1Q01581 520 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PRKCZQ05513 592 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FAM171A1Q5VUB5 890 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 NANOGP8Q6NSW7 305 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TMED4Q7Z7H5 227 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DCUN1D3Q8IWE4 304 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FIBCD1Q8N539 461 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 GAB3Q8WWW8 586 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RTP4Q96DX8 246 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 NELL2Q99435 816 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ATG5Q9H1Y0 275 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PPIL3Q9H2H8 161 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 NANOGQ9H9S0 305 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ZNF736B4DX44 427 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 SLC22A5O76082 557 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 AHSA1O95433 338 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 SF3B4Q15427 424 aaKnown RBP eCLIP6.89□□□□□ -1.315e-6■■■■■ 28.2
VPS53-204ENST00000437048 ZNF559Q9BR84 538 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 SDR39U1Q9NRG7 319 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 GRHPRQ9UBQ7 328 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DIP2CQ9Y2E4 1556 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FAM170BA6NMN3 283 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OR5K4A6NMS3 321 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ZBTB7AO95365 584 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 GJB1P08034 283 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CTNNB1P35222 781 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OR12D2P58182 307 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 C1QTNF8P60827 252 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 UBE2NLQ5JXB2 153 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CELF3Q5SZQ8 465 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms