RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR6C76A6NM76 312 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 PROM1O43490 865 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 C2P06681 752 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 KRT15P19012 456 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 NT5EP21589 574 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 BMP5P22003 454 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 PTX3P26022 381 aaPredicted RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 PIK3R1P27986 724 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 CASQ1P31415 396 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 DNAJA1P31689 397 aaKnown RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 BSGP35613 385 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 ALDH18A1P54886 795 aaKnown RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 SLC37A1P57057 533 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 FBXW4P57775 412 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 RPS6KA2Q15349 733 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 TRADDQ15628 312 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 NNATQ16517 81 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 NTRK2Q16620 822 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 FBXW10Q5XX13 1052 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 BICRALQ6AI39 1079 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 TTC19Q6DKK2 380 aaPredicted RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 ARSKQ6UWY0 536 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 ZDHHC24Q6UX98 284 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 GALNT12Q8IXK2 581 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 LRRC25Q8N386 305 aaPredicted RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 RHEBL1Q8TAI7 183 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 ZNF717Q9BY31 904 aaPredicted RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 POLDIP3Q9BY77 421 aaKnown RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 IPPKQ9H8X2 491 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 TEX10Q9NXF1 929 aaPredicted RBP13.33□□□□□ -0.28
SDC1-204ENST00000429035 CAMK2AQ9UQM7 478 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 RNF11Q9Y3C5 154 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 ASB4Q9Y574 426 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 ESYT3A0FGR9 886 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 HSPB2A8KAH6 182 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 CAPN14A8MX76 684 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 H0YIV9 168 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 DVL2O14641 736 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 TP53I11O14683 189 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 CT62P0C5K7 136 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 TYK2P29597 1187 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 KIR2DL3P43628 341 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 TMED10P49755 219 aaKnown RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 SERPINB8P50452 374 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 CCNG1P51959 295 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 IST1P53990 364 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 DUSP8Q13202 625 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 HSPB2Q16082 182 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 ACSF3Q4G176 576 aaPredicted RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 TBCELQ5QJ74 424 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 MRM1Q6IN84 353 aaKnown RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 PTGR2Q8N8N7 351 aaPredicted RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 RELL2Q8NC24 303 aaPredicted RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 PHF21BQ96EK2 531 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 LRRC46Q96FV0 321 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 DOCK7Q96N67 2140 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 RILPQ96NA2 401 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 NOL11Q9H8H0 719 aaKnown RBP13.32□□□□□ -0.28
SDC1-204ENST00000429035 PROK2Q9HC23 129 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 QPCTLQ9NXS2 382 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 SLC6A5Q9Y345 797 aa13.32□□□□□ -0.28
SDC1-204ENST00000429035 MED12Q93074 2177 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 KDM4EB2RXH2 506 aaPredicted RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 GNB5O14775 395 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 UGDHO60701 494 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CLDN9O95484 217 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CLPSP04118 112 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 SLC35E2P0CK97 266 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 ASCL1P50553 236 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 NRG3P56975 720 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 RPP38P78345 283 aaKnown RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 SLC7A5Q01650 507 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 PCDH1Q08174 1060 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CUL3Q13618 768 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 ACAP2Q15057 778 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 PCBP2Q15366 365 aaKnown RBP eCLIP13.31□□□□□ -0.28
SDC1-204ENST00000429035 CEBPEQ15744 281 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 SGO1Q5FBB7 561 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 TECRLQ5HYJ1 363 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CCDC91Q7Z6B0 441 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 TNIP2Q8NFZ5 429 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 OR52B6Q8NGF0 335 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 WDR20Q8TBZ3 569 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 RMND5BQ96G75 393 aaPredicted RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 SERPINI1Q99574 410 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 BRINP2Q9C0B6 783 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CLEC4MQ9H2X3 399 aaPredicted RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 DDX31Q9H8H2 851 aaKnown RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 METTL7AQ9H8H3 244 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 ACKR4Q9NPB9 350 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 CCM2LQ9NUG4 571 aaPredicted RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 CRIM1Q9NZV1 1036 aa13.31□□□□□ -0.28
SDC1-204ENST00000429035 TNPO3Q9Y5L0 923 aaKnown RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 ANKHD1Q8IWZ3 2542 aaKnown RBP13.31□□□□□ -0.28
SDC1-204ENST00000429035 MPDZO75970 2070 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 PRRC2AP48634 2157 aaKnown RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 EEF1E1-BLOC1S5C9J1V9 151 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 PGRMC2O15173 223 aa13.3□□□□□ -0.28
SDC1-204ENST00000429035 EEF1E1O43324 174 aaKnown RBP13.3□□□□□ -0.28
SDC1-204ENST00000429035 KLHL2O95198 593 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 194.9 ms